Jatropha Genome Database

JcCB0130701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0130701.10 - phase: 0 /partial
         (272 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013798 26S proteasome non-atpase regulatory subunit, puta...   505   e-143

>30147.m013798 26S proteasome non-atpase regulatory subunit,
           putative
          Length = 386

 Score =  505 bits (1300), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/272 (90%), Positives = 254/272 (93%)

Query: 1   MEGQEGTQQPHLVLAHKRFLLTHPDVQDIEKVRLKEEVFAAVKDDDMAPLYETLMAEGIL 60
           MEGQEGTQQPHL+LAHKRFLLTHPDVQDIEKVRLKEEVFAAVK DDMAPLYETL+ EG+L
Sbjct: 1   MEGQEGTQQPHLILAHKRFLLTHPDVQDIEKVRLKEEVFAAVKSDDMAPLYETLITEGLL 60

Query: 61  DKDQSVLDSMRAXXXXXXXXXXXXIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEQ 120
           +KDQS+LD MRA            IADAEENLGESEVREAHLAKSLF+IRIGDKEKALEQ
Sbjct: 61  EKDQSILDLMRAKNEDELKKIDEKIADAEENLGESEVREAHLAKSLFYIRIGDKEKALEQ 120

Query: 121 MKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY 180
           +KVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY
Sbjct: 121 LKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKVY 180

Query: 181 EGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA 240
           EGLYCMSTRNF KAA LFLDSISTFTTYELFPYDTFIFYTVLTSII+LDRVSLKQKVVDA
Sbjct: 181 EGLYCMSTRNFTKAATLFLDSISTFTTYELFPYDTFIFYTVLTSIITLDRVSLKQKVVDA 240

Query: 241 PEILTVIGKIPYLSEFLNSLYECQYKSFFSAF 272
           PEILTVIGKIPYLSEFLNSLY CQYKSFFSAF
Sbjct: 241 PEILTVIGKIPYLSEFLNSLYFCQYKSFFSAF 272