Jatropha Genome Database

JcCB0129921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0129921.10 - phase: 2 /TE
         (999 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30221.m002228 conserved hypothetical protein                           86   6e-17
29703.m001529 conserved hypothetical protein                           56   1e-07
30061.m000297 conserved hypothetical protein                           50   4e-06

>30221.m002228 conserved hypothetical protein
          Length = 433

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 2/150 (1%)

Query: 178 VSGLPKVLSDHCPIILXKNKQDWGSXPFRFIDAWRTFPTFKNLVSLWWR--EAPFEANAF 235
           ++ L K LSD CP+++      WG   FRF+D+W   P F  ++  WW       +  + 
Sbjct: 268 LTALKKGLSDRCPLVVEVYDTKWGLKAFRFMDSWLEQPGFDKMIDDWWLGFRNTNDGPSS 327

Query: 236 VISKLKFPKSKLKVXNKECFGNIEAEYANMDAKLDAFDRIYEVRAFSQEELIEYKTLSAN 295
           +I  L   + +L+  NK  FGNI+     ++ ++D  D  +E     Q+ L   + L  +
Sbjct: 328 IIRMLDLLREELRRWNKNSFGNIKQTIGRIEDQIDELDLSFEKAVPKQDVLRNRRLLWID 387

Query: 296 FWRTQKAQDSYWKQVSRIQWGKLGDRNTRL 325
            W+  K  + YW+Q+SR +W K GD+NT L
Sbjct: 388 LWQKYKQDEIYWRQMSRSKWVKDGDQNTIL 417


>29703.m001529 conserved hypothetical protein
          Length = 171

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 596 PKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHLKFVDDTLL 655
           P+KGL+Q C LSP+  IL AEGL+++F K   +GL  G   A G   S+ H  FVD++  
Sbjct: 34  PQKGLKQECPLSPYLSILCAEGLSAMFRKLDEMGLLYGCKVARG-APSVNHPFFVDNSYF 92

Query: 656 FCESSMKCILNVKRILHCFE 675
           F +++M    +V  IL  +E
Sbjct: 93  FFKANMMESSHVTNILKLYE 112


>30061.m000297 conserved hypothetical protein
          Length = 366

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 588 GSPSCEFQPKKGLRQGCLLSPFHFILSAEGLNSLFIKASFLGLFKGFPCAIGDNDSITHL 647
           G+P   F P +GL QG  LSP+ F+  AE   SL  KA    +  G         S+++L
Sbjct: 224 GTPGAFFAPSRGLHQGGPLSPYLFLFCAEAFASLIRKAESAWILHGVK-VYRRAPSVSYL 282

Query: 648 KFVDDTLLFCESSMKCILNVKRILHCFELLSG 679
            F DD ++F +++   I  +K ++  +E+ SG
Sbjct: 283 FFKDDYVIFAKANKDEIDVIKHLIQDYEVASG 314