Jatropha Genome Database

JcCB0128961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0128961.10 + phase: 1 /pseudo/partial
         (170 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001711 DNA binding protein, putative                            84   2e-17

>29680.m001711 DNA binding protein, putative
          Length = 459

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 2/75 (2%)

Query: 93  QSNLVQQPGNNKSEVSQQDNAKTGFDGNDAGSALEESFQSVSKKQKVQENKTCKGFDPED 152
           QSN+VQ PGNNK EVS+ D+A+T    +  G ALE S Q+ S+KQK  EN+T +  DPED
Sbjct: 384 QSNIVQSPGNNKLEVSELDHARTEI--SSGGGALEGSSQNGSRKQKAPENRTGEDLDPED 441

Query: 153 NECSPASAKRPRTDE 167
           +E  PASAKRPR DE
Sbjct: 442 DESGPASAKRPRADE 456