Jatropha Genome Database

JcCB0127031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0127031.10 + phase: 0 
         (197 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29790.m000843 Transcription factor BIM1, putative                     222   7e-59
30138.m003913 Transcription factor BIM1, putative                      92   1e-19
30138.m003899 conserved hypothetical protein                           92   1e-19

>29790.m000843 Transcription factor BIM1, putative
          Length = 311

 Score =  222 bits (566), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 127/205 (61%), Positives = 152/205 (74%), Gaps = 22/205 (10%)

Query: 6   KNHHPPVEALLDHPQGLKNGSAHENTAILTNVHNSIDSDLGATAVPFNVQVHSNMFV-VG 64
           KNHH  VE+L+DH Q LKNGSA E TA+LTNVHNSI+SDLG       VQ   N F  VG
Sbjct: 116 KNHHTSVESLVDHSQVLKNGSAPEVTAMLTNVHNSIESDLG-------VQAQMNTFAAVG 168

Query: 65  KSGVTTQPVQESVSDAENMEFQLQPQQWHGRPCATECDAPNNTVNGQEEPMGETGSDSIS 124
           + G+T Q VQESVSDAENM +QLQ Q W G+PCA+EC AP+NTVNGQEE M ++G   +S
Sbjct: 169 RGGITAQSVQESVSDAENMAYQLQSQLWQGQPCASECTAPSNTVNGQEEQMSKSG--LVS 226

Query: 125 STYSQGILDTLTQALQSSGVDLSQTNISVQIDVGKQ---GSNIVASNSKDQENPFLNNQ- 180
           ST+SQGILD LTQALQSSGVDLSQT+ISVQIDV KQ   G+   AS+SKDQE+ +LN+Q 
Sbjct: 227 STFSQGILDNLTQALQSSGVDLSQTSISVQIDVSKQANSGAAFAASSSKDQESLYLNSQM 286

Query: 181 --------ALEDSNRARKRSRREKN 197
                    +EDS++ARKR R +K+
Sbjct: 287 MEQTGFGSCMEDSDQARKRLRTQKS 311


>30138.m003913 Transcription factor BIM1, putative
          Length = 567

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 90/160 (56%), Gaps = 12/160 (7%)

Query: 49  AVPFNVQVHSNMFVVGKSG-VTTQPVQESVSDAENMEFQLQPQQWHGRPCATECDAPNNT 107
            +PF V +  N F  G++G    Q     VSD EN   Q + Q    R C TE     + 
Sbjct: 409 GMPFPVSLQPNFFNCGRNGGAVAQLPPRLVSDVENTASQPESQSNQTRSCTTEGAVAVDK 468

Query: 108 VNGQEEPMGETGSDSISSTYSQGILDTLTQALQSSGVDLSQTNISVQIDVGKQG---SNI 164
           +  Q+  + E G+ +ISS YSQG+L+TLTQALQSSGVDLSQ +ISVQID+GK+    SNI
Sbjct: 469 LKEQQLSI-EGGTINISSVYSQGLLNTLTQALQSSGVDLSQASISVQIDLGKRANRQSNI 527

Query: 165 VASNSKDQENPFLNNQAL-------EDSNRARKRSRREKN 197
             S +KD E P  N   +       E+S+ A K+ +  K+
Sbjct: 528 PTSINKDNEVPSCNQGTIRPRVSSGEESDHALKKLKTSKS 567


>30138.m003899 conserved hypothetical protein
          Length = 348

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 70/238 (29%)

Query: 6   KNHHPPVEALLDHPQGLKNGSA---------HENT-----AILTNVHNSIDSDLGA---- 47
           +N H  V++ + HPQ +KNGS           ENT      +LT   N ++SD       
Sbjct: 126 RNSHWRVQSFIGHPQPIKNGSGPGSTIPGKFDENTIAINPTMLTGAQNQVESDPSRDVTC 185

Query: 48  ---------------------TAVPFNVQVHSNMFV---VGKSGVTTQPVQESVSDAENM 83
                                T +P  + VHS+  +   V   G    P+Q+ V+DA++ 
Sbjct: 186 KAMDRHPEVANKVLLHPVSLQTTIP--IPVHSDGAIAHPVHSDGAIAHPLQQPVTDAQSA 243

Query: 84  EFQLQPQQWHGRPCATECDAPNNTVNGQEEPMGETGSDSISSTYSQGILDTLTQALQSSG 143
           +F +                 +  +N QEE   E G+ SISS YSQG+L+ LT++LQS+G
Sbjct: 244 DFPIT----------------SGALNQQEELTIEGGTISISSVYSQGLLNNLTRSLQSAG 287

Query: 144 VDLSQTNISVQIDVGKQGSNIVASNSKDQENPFLNNQAL----------EDSNRARKR 191
           VDLS  NISVQID+GK+ +  +AS +   ++P L+N  +          EDS++A+KR
Sbjct: 288 VDLSDANISVQIDLGKRANRGLASGTSTTKDPPLSNNQVAAHLRDVSSGEDSDQAQKR 345