Jatropha Genome Database

JcCB0126561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0126561.10 + phase: 2 /pseudo/partial
         (177 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28623.m000407 GDP mannose-4,6-dehydratase, putative                   174   2e-44
36004.m000026 GDP mannose-4,6-dehydratase, putative                    57   4e-09

>28623.m000407 GDP mannose-4,6-dehydratase, putative
          Length = 237

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/188 (51%), Positives = 107/188 (56%), Gaps = 46/188 (24%)

Query: 27  TPFHPKSPYAVLKCVAHWYTVNYHEAYRLFACNRTLFNHEAMQKRCG*FCNKKSRTI--- 83
           +PFHP+SPYA  KC AHWYTVNY EAY LFACN  LFNHE+ ++       K +R +   
Sbjct: 13  SPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRI 72

Query: 84  ----------------------------MWW------PRRSRIRWRNWH---------LG 100
                                       MW       P    +     H          G
Sbjct: 73  KIGLQSKLFLGNLNASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVEEFLQVAFG 132

Query: 101 ILALN*KDHVVIDKRYFRPAEVDNLKGDSSNARKVLGWKPKVGFEQLVKTMVDEDIEFAK 160
            + LN KDHVVIDKRYFRPAEVDNLKGDSS ARKVLGWKPKVGFEQLVK MVDEDIE AK
Sbjct: 133 YVGLNWKDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPKVGFEQLVKMMVDEDIELAK 192

Query: 161 REKMLVDV 168
           REK+LVD 
Sbjct: 193 REKVLVDA 200


>36004.m000026 GDP mannose-4,6-dehydratase, putative
          Length = 93

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 25 KTTPFHPKSPYAVLKCVAHWYTVNYHEAYRLFACN 59
          +TTPF+P+SPYAV K  A+W TVNY EAY ++ACN
Sbjct: 59 ETTPFYPRSPYAVAKMYAYWITVNYREAYGMYACN 93