Jatropha Genome Database

JcCB0126391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0126391.10 - phase: 1 /partial
         (593 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004544 conserved hypothetical protein                          368   e-102

>30076.m004544 conserved hypothetical protein
          Length = 606

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 254/410 (61%), Gaps = 31/410 (7%)

Query: 3   DVNSQRAEDFTFMTEREVPVLGKVATED--NKDEKRTETLRMKLWEILGTVSSPRSQPSH 60
           D NSQ+A DFTF T +EV V  KVATE    ++ +RTETLRMKLWEILGTVSSPRSQPS+
Sbjct: 164 DGNSQKAADFTFATAQEVLVSDKVATESESKRENRRTETLRMKLWEILGTVSSPRSQPSN 223

Query: 61  SLAPEACANNLKQEQVHQQKGDGVVKQIQNSDTIETDSENPDNTMXXXXXXXXXXXXXXX 120
           S A +  ANN K E+ H Q GD V+K IQNSDTIETDSENPD+TM               
Sbjct: 224 SQARDEGANNSKLEKSHHQNGDAVIKPIQNSDTIETDSENPDHTMKRPATRSLTQNIVKS 283

Query: 121 XIQPKKTKTGQSTLSKLKLQEKSIFSFEDGLHRKGDAAISGGSSMSARNKGRRKNYVIEP 180
             QP KTKTG S+  + KL EK+IFSFE+GL  KGD A++GGSSMS R KG RK Y IEP
Sbjct: 284 KAQPVKTKTGPSSSYRNKLPEKNIFSFEEGLLGKGDGAVNGGSSMSGRKKGGRKTYGIEP 343

Query: 181 RKIHFTENNSADEIQKATHRSETPPPSAEKASSLSDKM-GIKGCSPQSKGTSLEKKNGNG 239
            KIHF+E N+AD IQ   H +   P   EKASS SD+   I+GCSPQSKG  +E+ N   
Sbjct: 344 HKIHFSEKNNADGIQ-GEHCTSVNPTPVEKASSYSDRRENIQGCSPQSKGEYVEQINRTQ 402

Query: 240 GDSHSSPKRDSHMPAGTNRADLQGDFSSPAISENEDQQGDVGNPSLKRVMEPQDEFESPT 299
           GD+H SP+ DSH  AG NR + QGD SS A+ EN+DQQ     P LK  M+PQDEF+SPT
Sbjct: 403 GDTHQSPRTDSHYSAGKNRVERQGDDSSRAVPENKDQQEAFDQPYLKNFMDPQDEFQSPT 462

Query: 300 FRVNXXXXXXXXX------XXXXXDQMEQTFYSPAPVKRRFTLGNIRSFRTSQTSKENCH 353
           FR++                    DQ+EQ  YSP     RF LG IR+FRT   SK +CH
Sbjct: 463 FRISTPMLSSSPSSTPNSDQTPNTDQLEQKLYSPLLAGTRFNLGKIRNFRTMNNSKADCH 522

Query: 354 PSDAKT--------------------ELSNVAVELKDSPPRKPS-LNGKK 382
             ++KT                    EL +  +ELKDSPP KPS L G+K
Sbjct: 523 TPNSKTESSWSPNLELCFNMRLHFLIELQDDEMELKDSPPSKPSPLKGRK 572