Jatropha Genome Database

JcCB0124931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0124931.10 + phase: 0 /pseudo/partial
         (311 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29610.m000406 adenylosuccinate lyase, putative                        537   e-153

>29610.m000406 adenylosuccinate lyase, putative
          Length = 473

 Score =  537 bits (1383), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/305 (85%), Positives = 273/305 (89%), Gaps = 10/305 (3%)

Query: 17  LPFRCFPHSWTASPTTLGKEMAVFAVRLSEQRQEISQVKIKGKFAGAVGNYNAHIVAYPN 76
           +P     H   ASPTTLGKEMAVFA RLSEQRQEISQVKIKGKFAGAVGNYNAH+VAYP 
Sbjct: 169 VPMLSRTHGQPASPTTLGKEMAVFAARLSEQRQEISQVKIKGKFAGAVGNYNAHLVAYPE 228

Query: 77  VNWPLIAKEFVESLGLYFNPYVTQIEPHDYMARLFQAIIVFNNILIDFDRDIWGYISLAY 136
           VNWPLIAKEFVESLGL FNPYVTQIEPHDYMARLF AII FN ILIDFDRDIWGYI+LAY
Sbjct: 229 VNWPLIAKEFVESLGLCFNPYVTQIEPHDYMARLFHAIITFNTILIDFDRDIWGYIALAY 288

Query: 137 FKQITKAGEIGSSTMPHKVNPIDFENSEGNLGKANGGLSHLSEKLPISRWQE-------- 188
           FKQITKAGEIGSSTMPHKVNPIDFENSEGNLGKANG LSHLSEKLPISRWQ         
Sbjct: 289 FKQITKAGEIGSSTMPHKVNPIDFENSEGNLGKANGSLSHLSEKLPISRWQRDLTDSTVL 348

Query: 189 --YGEGLGHSLLAYRSALQGIGKLQVNESRLSEDLNHSWEVLAEPIQTVMRRYGVPEPYE 246
              GEGLGHSLLAY+SALQGIGKLQVNESRLSEDLNHSWEVLAEPIQTVMRRY VPEPYE
Sbjct: 349 RNMGEGLGHSLLAYKSALQGIGKLQVNESRLSEDLNHSWEVLAEPIQTVMRRYDVPEPYE 408

Query: 247 KLKELTRGRAVTKESIREFIEGLELPKETKAYLLELSPHNYVGAAIELGKTVDVTMNLIN 306
           KLKELTRGRAVTKES+ EFIEGLELPKETKAYLL+L+PH+YVG AIEL KTV++TMNL+N
Sbjct: 409 KLKELTRGRAVTKESLSEFIEGLELPKETKAYLLQLTPHSYVGEAIELAKTVNITMNLVN 468

Query: 307 GVTAL 311
           GV AL
Sbjct: 469 GVRAL 473