Jatropha Genome Database

JcCB0124021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0124021.20 - phase: 0 /partial
         (550 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29682.m000601 F-box/leucine rich repeat protein, putative             874   0.0  
29451.m000049 ubiquitin-protein ligase, putative                      375   e-104

>29682.m000601 F-box/leucine rich repeat protein, putative
          Length = 695

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/555 (78%), Positives = 467/555 (84%), Gaps = 7/555 (1%)

Query: 1   PSSSHLGVRLCTFIQAMSNAYMSRSVEFLLLDEDLPPVLQAYPDVSKSLTCLDLLTVSLT 60
           PSSS LG       +            F    ED+PPVL+AY DVSKSLTCLDLLTVSLT
Sbjct: 143 PSSSQLGADFVPLFEQCKLLSCLDLSSFYYWTEDVPPVLEAYSDVSKSLTCLDLLTVSLT 202

Query: 61  DGFKAHEIRVITAACTNLTKFLVVCMFDPSYLGFIGDETLLAIAANCPKLSVLHLVDTSS 120
           DGFK+ EI+VITAACTNLTKFLV CMFDPSYLGF GDETLLA+AANCPKLSVLHLVDTSS
Sbjct: 203 DGFKSDEIKVITAACTNLTKFLVACMFDPSYLGFTGDETLLAVAANCPKLSVLHLVDTSS 262

Query: 121 LGNTRHDPEDEGYTGEDARISVVGLVDFFSGLPXXXXXXXXXXKNVRDSAVAFEALNSRC 180
           LGN R DPEDEGY+G+DAR+SV GLVDFFSGLP          KNVRDS VA EALNSRC
Sbjct: 263 LGNIRSDPEDEGYSGDDARVSVNGLVDFFSGLPLLEELVLRVCKNVRDSFVALEALNSRC 322

Query: 181 PKLKVLNLEQFHGICMAVESQLDGIALCSGLESLSIKKAADLTDMGLIEIARGCHKLAKF 240
           PKLKVL L QFHG+CMAVESQLDG+ALCSGL+SLSIKK ADLTDMGLIEIARGC +LAKF
Sbjct: 323 PKLKVLELVQFHGVCMAVESQLDGVALCSGLKSLSIKKCADLTDMGLIEIARGCCRLAKF 382

Query: 241 EVEGCKKITMKGIRTMASLLHKTLIEVKISACKNLDTAAILRALEPIRSRIERLHIDCIW 300
           EVEGCKKITMKG+RTMASLLHKTL+EVKISACKNLD  A LRALEPIR RIERLHIDC+W
Sbjct: 383 EVEGCKKITMKGLRTMASLLHKTLVEVKISACKNLDAVASLRALEPIRQRIERLHIDCMW 442

Query: 301 DGLPES-TCAANHSFNLNDNLFD----ESSSKNKRLKYSSDARYVESDLDGFWCKSWDKL 355
           + L E      NHSF+LN+ LF     E SS+NKR+KYS D   +++  +G W  SWD L
Sbjct: 443 NSLQEEDNYGGNHSFDLNEILFGSDEHEYSSRNKRIKYSKDGFCMQN--NGVWSNSWDNL 500

Query: 356 RYLSLWIGVGELLNPLPMAGLEDCPSLEEIRIRVEGDCRGRHKPLQHAFGLSCLAQYHRL 415
           + LSLWIGVGELL PLPMAGLEDCPSLEEI+IRVEGDCRGRHK  Q AFGLSCLA Y RL
Sbjct: 501 KCLSLWIGVGELLTPLPMAGLEDCPSLEEIQIRVEGDCRGRHKLSQRAFGLSCLAHYPRL 560

Query: 416 SKMQLDCSDTIGFALTAPSGQMDLSLWERFFLNGIGNLSLNELDYWPPQDRDVNQRSLSL 475
           SKMQLDCSDTIGFALTAPSGQMDLSLWERFFLNGIG+LSL ELDYWPPQDRDVNQRSLSL
Sbjct: 561 SKMQLDCSDTIGFALTAPSGQMDLSLWERFFLNGIGSLSLIELDYWPPQDRDVNQRSLSL 620

Query: 476 PGAGLLAECLTLRKLFIHGTAHEHFMMFLLRIPNLRDVQLREDYYPAPENDMSTEMRADS 535
           PGAGLLA+CL LRKLFIHGTAHEHFMMFLLRIPNLRDVQLREDYYPAPENDMSTEMR  S
Sbjct: 621 PGAGLLAQCLALRKLFIHGTAHEHFMMFLLRIPNLRDVQLREDYYPAPENDMSTEMRVGS 680

Query: 536 CCRFEDALNRRHILD 550
           C RFEDALNRRHI+D
Sbjct: 681 CSRFEDALNRRHIVD 695


>29451.m000049 ubiquitin-protein ligase, putative
          Length = 387

 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/368 (54%), Positives = 244/368 (66%), Gaps = 42/368 (11%)

Query: 165 NVRDSAVAFEALNSRCPKLKVLNLEQFHGICMAVESQLDGIALCSGLESLSIKKAADLTD 224
           NVRD+  A E  NS+CP LK L L QFHGIC  ++++ D IA+CS LES SIKK+ADL+D
Sbjct: 41  NVRDTWPALEMPNSKCPNLKYLKLGQFHGICKGIDARPDVIAICSKLESSSIKKSADLSD 100

Query: 225 MGLIEIARGCHKLAKFEVEGCKKITMKGIRTMASLLHKTLIEVKISACKNLDTAAILRAL 284
             L  I+ GC +L+KFEV GCKKIT  G+  +AS+L KTLI+ KIS CK+L+T   LRAL
Sbjct: 101 ASLTAISFGCLRLSKFEVHGCKKITEIGMNKLASILRKTLIDGKISCCKHLNTVCSLRAL 160

Query: 285 EPIRSRIERLHIDCIWDG----------------LPESTCAANHSFNLNDNLFDESSSKN 328
           EPIR R++R HIDC+W+                 L   T +    FN  +     +SS+ 
Sbjct: 161 EPIRERVQRFHIDCLWENVEKFGGGASSSGQSNELKHFTVSEKRGFNWEET---ATSSRK 217

Query: 329 KRLKYSSDARYVESDLDGFWCKSWDKLRYLSLWIGVGELLNPLPMAGLEDCPSLEEIRIR 388
           K  K++S    +                       +GELL PL + GLE+CP LEEI+I+
Sbjct: 218 KSKKHNSKEMKM-----------------------IGELLIPLALPGLENCPGLEEIKIK 254

Query: 389 VEGDCRGRHKPLQHAFGLSCLAQYHRLSKMQLDCSDTIGFALTAPSGQMDLSLWERFFLN 448
           VEGDCR   KP   +FGLS LA Y RLSKM LDC   IGFALTAP G  DLS WERF+L 
Sbjct: 255 VEGDCRYLSKPSTDSFGLSSLACYPRLSKMSLDCGAAIGFALTAPLGLGDLSPWERFYLK 314

Query: 449 GIGNLSLNELDYWPPQDRDVNQRSLSLPGAGLLAECLTLRKLFIHGTAHEHFMMFLLRIP 508
           GIG+L+L E+D WPPQD DVNQRSL+LP AGLLA+C +LRKLFIHGTA+EHFMMFLL++P
Sbjct: 315 GIGSLNLTEVDNWPPQDTDVNQRSLTLPAAGLLAQCRSLRKLFIHGTANEHFMMFLLKVP 374

Query: 509 NLRDVQLR 516
            LRDVQLR
Sbjct: 375 TLRDVQLR 382