Jatropha Genome Database

JcCB0123131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0123131.20 + phase: 0 
         (523 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001445 rab GDP-dissociation inhibitor, putative                661   0.0  
29913.m000155 rab GDP-dissociation inhibitor, putative                 97   2e-20
29838.m001692 rab GDP-dissociation inhibitor, putative                 96   4e-20
30221.m002217 rab GDP-dissociation inhibitor, putative                 89   4e-18

>29830.m001445 rab GDP-dissociation inhibitor, putative
          Length = 551

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/511 (67%), Positives = 390/511 (76%), Gaps = 16/511 (3%)

Query: 1   MSEPPSYPPIDPTTFDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPD 60
           M+EPPSYP IDPTTFDLI++GTGL ES+IAAAASASGKSVLH+D N FYGSHFSSLSIPD
Sbjct: 1   MTEPPSYPSIDPTTFDLILIGTGLSESIIAAAASASGKSVLHIDQNKFYGSHFSSLSIPD 60

Query: 61  LXXXXXXXXXXXXXXXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNL 120
           L                        DF+VVNL  + LYS+VEISSFS +L++++ +KF+L
Sbjct: 61  LTSFLNSNSVPTPSPPPPQ--TPHPDFTVVNLTTQSLYSNVEISSFSNELIEQNCSKFSL 118

Query: 121 DVSGPRVLFCADKSVNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSL 180
           D+SGPRVL+CAD S++L++K+GA+QYVEFKSIDASFVGDENG LWNVPDSRA+IFKDKSL
Sbjct: 119 DISGPRVLYCADNSIDLMIKTGANQYVEFKSIDASFVGDENGKLWNVPDSRAAIFKDKSL 178

Query: 181 SLMEKNRLMRFFKLVQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTK 240
           SLMEKNRLMRFFKLVQ Q+A                       +IS +DLESPFV+FL K
Sbjct: 179 SLMEKNRLMRFFKLVQSQIATNENQEQQEEEDV----------RISEQDLESPFVDFLNK 228

Query: 241 MXXXXXXXXXXXYAIAMADYDQDNIG-ACKGLLKTKDGIDRLATYQSSVGRFTNALGAFI 299
           M           YAI MAD DQ+N G A K LLKTKDGIDRLA YQSS+GRFTNALGAFI
Sbjct: 229 MKLSSKIKSIILYAIVMADCDQENTGGANKDLLKTKDGIDRLALYQSSIGRFTNALGAFI 288

Query: 300 YPIYGQGEMPPAFCRRAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVL 359
           YPIYGQGE+PPAFCRRAAVKG IYVLRMPV+ALLMDK++G YKGIRLASGQ+I+SQKLVL
Sbjct: 289 YPIYGQGELPPAFCRRAAVKGCIYVLRMPVVALLMDKNNGNYKGIRLASGQEIYSQKLVL 348

Query: 360 DPSLTVPSPSASPLDSPHENFQFLCVRDVKQKVARGICIIRSSLKPDIANFLVVYPPRSL 419
           DPS TVPS   SP D  HE+F FL VRDVKQKVAR ICI + SLKPD +NFL VYPPRSL
Sbjct: 349 DPSFTVPS---SPSDPLHESFCFLSVRDVKQKVARAICITKCSLKPDTSNFLAVYPPRSL 405

Query: 420 YPEQMTSIRALQIGGSLAVCPPDTFVLYLSALCDDVHQGKKXXXXXXXXXXTCPDSGQPE 479
           YPEQ TSIRALQ+GGSLAVCP + F+LYLSALCDDVHQGKK          +  DS  PE
Sbjct: 406 YPEQSTSIRALQMGGSLAVCPTNMFILYLSALCDDVHQGKKLLNTAMNALLSSTDSENPE 465

Query: 480 TSSLDQTENAVAKPILLWSALYIQELTTVCF 510
           + S  QTEN   + +LLWSALYIQELTT  F
Sbjct: 466 SCSTGQTENTEVQSMLLWSALYIQELTTGQF 496


>29913.m000155 rab GDP-dissociation inhibitor, putative
          Length = 445

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 162/407 (39%), Gaps = 86/407 (21%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +D++V+GTGL E +++   S  G  VLH+D N +YG   +SL++  L             
Sbjct: 5   YDVVVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQLWK----------- 53

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNLDVSGPRVLFCADKS 134
                               R    D    S  A      S  +N+D+  P+ +      
Sbjct: 54  --------------------RFRGDDKPPESLGA------SRDYNVDMI-PKFMMANGAL 86

Query: 135 VNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRFFKL 194
           V +L+ +  ++Y+ FK++D SFV ++ G +  VP +     K   + L EK R  +FF  
Sbjct: 87  VRILIHTDVTKYLNFKAVDGSFVYNK-GKIHKVPANDVEALKSPLMGLFEKRRARKFFIY 145

Query: 195 VQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXXXYA 254
           VQ                            IS   L+   V+F+                
Sbjct: 146 VQ-----DYDENDPKSHERLDLNKVKARDVISKYGLDDNTVDFIGH-------------- 186

Query: 255 IAMADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPIYGQGEMPPAFCR 314
            A+A Y  DN      L    D + R+  Y  S+ RF      +IYP+YG GE+P AF R
Sbjct: 187 -ALALYLDDNYLDEPAL----DFVKRMKLYADSLARFQGG-SPYIYPLYGLGELPQAFAR 240

Query: 315 RAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPSLTVPSPSASPLD 374
            +AV G  Y+L  P   +  D     Y G+  + G+    +K+V DPS  +P+       
Sbjct: 241 LSAVYGGTYMLSKPECKVEFDVDGKAY-GV-TSEGETAKCKKVVCDPSY-LPNK------ 291

Query: 375 SPHENFQFLCVRDVKQKVARGICIIRSSL--KPDIANFLVVYPPRSL 419
                     V+ +  KVAR ICI+   +    D  +  V+ P + L
Sbjct: 292 ----------VKTI-GKVARAICIMSHPIPNTHDSHSVQVILPQKQL 327


>29838.m001692 rab GDP-dissociation inhibitor, putative
          Length = 443

 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 155/386 (40%), Gaps = 86/386 (22%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +D+IV+GTGL E +++   S  G  VLH+D N +YG   SSL++  L             
Sbjct: 5   YDVIVLGTGLKECILSGLLSVDGLKVLHMDQNDYYGGESSSLNLNQLWK----------- 53

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNLDVSGPRVLFCADKS 134
                               R   SD    S         S ++N+D+  P+ +      
Sbjct: 54  --------------------RFRGSDKPPESLGP------SKEYNVDMI-PKFIIANGNL 86

Query: 135 VNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRFFKL 194
           V +L+ +  ++Y+ FK++D SFV ++ G ++ VP +     K   + L EK R  +FF  
Sbjct: 87  VRVLIHTDVTKYLNFKAVDGSFVYNK-GKIYKVPANDVEALKSPLMGLFEKRRARKFFIY 145

Query: 195 VQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXXXYA 254
           VQ                            IS   LE   ++F+                
Sbjct: 146 VQ-----DYEDNDPKSHEGLDLNKVTAREIISKYGLEDDTIDFIGH-------------- 186

Query: 255 IAMADYDQDNIGACKGLLKTKDGIDRLATYQSSVGRFTNALGAFIYPIYGQGEMPPAFCR 314
            A+A +  D+      L    D + R+  Y  S+ RF      +IYP+YG GE+P AF R
Sbjct: 187 -ALALHLDDSYLDQPAL----DFVKRMKLYAESLARFQGG-SPYIYPMYGLGELPQAFAR 240

Query: 315 RAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPSLTVPSPSASPLD 374
            +AV G  Y+L  P   +  D + G   G+  + G+    +K+V DPS            
Sbjct: 241 LSAVYGGTYMLNKPECKVEFD-ADGKAIGVT-SEGETAKCKKVVCDPS------------ 286

Query: 375 SPHENFQFLCVRDVK-QKVARGICII 399
                  +L  +  K  KVAR ICI+
Sbjct: 287 -------YLSNKVQKVGKVARAICIM 305


>30221.m002217 rab GDP-dissociation inhibitor, putative
          Length = 444

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 138/356 (38%), Gaps = 82/356 (23%)

Query: 15  FDLIVVGTGLPESVIAAAASASGKSVLHLDHNHFYGSHFSSLSIPDLXXXXXXXXXXXXX 74
           +D+IV+GTGL E +++   S  G  VLH+D N +YG   +SL++  L             
Sbjct: 5   YDVIVLGTGLKECILSGLLSVDGLKVLHMDKNDYYGGESASLNLNQLWK----------- 53

Query: 75  XXXXXXXANADDFSVVNLAIRPLYSDVEISSFSAQLLQEHSNKFNLDVSGPRVLFCADKS 134
                               R   SD   +   +      S  +N+D+  P+ +      
Sbjct: 54  --------------------RFRGSDKPPAHLGS------SRDYNVDMI-PKFMMANGNL 86

Query: 135 VNLLLKSGASQYVEFKSIDASFVGDENGNLWNVPDSRASIFKDKSLSLMEKNRLMRFFKL 194
           V +L+ +  ++Y+ FK++D SFV ++ G +  VP +     K   + + EK R  +FF  
Sbjct: 87  VRVLIHTDVTKYLYFKAVDGSFVYNK-GKVHKVPATDMEALKSPLMGIFEKRRARKFF-- 143

Query: 195 VQGQLAATXXXXXXXXXXXXXXXXXXXXXKISVEDLESPFVEFLTKMXXXXXXXXXXXYA 254
                                         I V+D      +    M             
Sbjct: 144 ------------------------------IYVQDYNESDPKTHEGMDLTRVTTRELIAK 173

Query: 255 IAMADYDQDNIGACKGLLKTK--------DGIDRLATYQSSVGRFTNALGAFIYPIYGQG 306
             + D   D IG    L +          D + R+  Y  S+ RF      +IYP+YG G
Sbjct: 174 YGLDDNTMDFIGHALALHRDDRYLDEPALDTVMRMKLYAESLARFQGG-SPYIYPLYGLG 232

Query: 307 EMPPAFCRRAAVKGSIYVLRMPVIALLMDKSSGGYKGIRLASGQDIFSQKLVLDPS 362
           E+P AF R +AV G  Y+L  P   +  D+  G   G+  + G+    +K+V DPS
Sbjct: 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGV-TSEGETAKCKKVVCDPS 286