Jatropha Genome Database

JcCB0123131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0123131.10 + phase: 0 /partial
         (197 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001447 heterogeneous nuclear ribonucleoprotein, putative       380   e-106
30169.m006447 heterogeneous nuclear ribonucleoprotein, putative       207   2e-54

>29830.m001447 heterogeneous nuclear ribonucleoprotein, putative
          Length = 264

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/193 (94%), Positives = 190/193 (98%)

Query: 5   LTIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGSMQVEFALQRDRQNMGRRYVEVFRCK 64
           + IFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAG+MQVEFALQRDRQNMGRRYVEVFRCK
Sbjct: 72  IDIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCK 131

Query: 65  RQDYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSDKEQLEYTEILKMRGLPFSVKKPEI 124
           RQDYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSDK+QLEYTEILKMRGLPFS KKPEI
Sbjct: 132 RQDYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSDKDQLEYTEILKMRGLPFSAKKPEI 191

Query: 125 IDFFKEFKLVEERIHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPST 184
           I+FFKEF+LVE+RIHIACRPDGKATGEAYVEF SA+EAKRAMSKDKMTIGSRYVELFPST
Sbjct: 192 IEFFKEFELVEDRIHIACRPDGKATGEAYVEFASADEAKRAMSKDKMTIGSRYVELFPST 251

Query: 185 PDEARRAESRSRQ 197
           PDEARRAESRSRQ
Sbjct: 252 PDEARRAESRSRQ 264



 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 109 ILKMRGLPFSVKKPEIIDFFKEFKLVEERIHIACRPDGKATGEAYVEFVSAEEAKRAMSK 168
           ++++RGLPF+    +I  FF    +V+    +    +G+ TGEA+V F  A + + A+ +
Sbjct: 59  VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKNGRFTGEAFVVFAGAMQVEFALQR 115

Query: 169 DKMTIGSRYVELF 181
           D+  +G RYVE+F
Sbjct: 116 DRQNMGRRYVEVF 128


>30169.m006447 heterogeneous nuclear ribonucleoprotein, putative
          Length = 260

 Score =  207 bits (528), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 141/193 (73%), Gaps = 10/193 (5%)

Query: 7   IFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGSMQVEFALQRDRQNMGRRYVEVFRCKRQ 66
           + +FF GLDIVDVL V+K G+FTGEAF V    +QV+FALQ++RQNMGRRYVEVFR KRQ
Sbjct: 75  VAEFFHGLDIVDVLFVHKGGKFTGEAFCVLGCPLQVDFALQKNRQNMGRRYVEVFRSKRQ 134

Query: 67  DYYNAVAAEVNYEGIYDTDYHGSPP--PSKAKRFSD-KEQLEYTEILKMRGLPFSVKKPE 123
           DYY A+A EV       +D  G  P    +AK + + K+  E+T +L++RGLPFS  K +
Sbjct: 135 DYYKAIANEV-------SDARGGSPRRAPRAKSYDEGKDSAEHTGVLRLRGLPFSAGKDD 187

Query: 124 IIDFFKEFKLVEERIHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVELFPS 183
           I++FFK+F L E+ +HI    +G+ TGEA+VEF SAE++K AM+KD+MT+GSRY+ELFPS
Sbjct: 188 IMEFFKDFVLSEDSVHITMNSEGRPTGEAFVEFASAEDSKAAMAKDRMTLGSRYIELFPS 247

Query: 184 TPDEARRAESRSR 196
           + +E   A +R R
Sbjct: 248 SIEELEEAVTRGR 260