Jatropha Genome Database

JcCB0122531.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0122531.20 - phase: 1 /partial
         (136 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29686.m000873 conserved hypothetical protein                          133   2e-32
29785.m000941 conserved hypothetical protein                           75   1e-14

>29686.m000873 conserved hypothetical protein
          Length = 626

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 71/102 (69%), Gaps = 2/102 (1%)

Query: 36  AHVDWNTG-VMPEFDYNSIDWTLDNNMXXXXXXXXXXXXXXXXXXXXXTRMNSMNSSCIS 94
           +HVDWN G  MPEFDY SIDWTLD N+                      RMNSMNSSCIS
Sbjct: 526 SHVDWNNGGSMPEFDYTSIDWTLDTNLSSSKRGLWLGLSSLLSDRSG-ARMNSMNSSCIS 584

Query: 95  GLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSPSP 136
           GLR+AGA KE +SS GL EWTSPFAGKDIFSLPRQFVTSPSP
Sbjct: 585 GLREAGAAKEMASSVGLREWTSPFAGKDIFSLPRQFVTSPSP 626


>29785.m000941 conserved hypothetical protein
          Length = 663

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 53/113 (46%), Gaps = 15/113 (13%)

Query: 38  VDWNT-GVMPEFDYNSIDWTLDNNMX--------------XXXXXXXXXXXXXXXXXXXX 82
           VDW+T G M + DY SIDW+LD  +                                   
Sbjct: 550 VDWSTAGSMAQLDYTSIDWSLDRGLSSPSHNGLWLGSGSLKNNTQMYDSSTSALGAKLTM 609

Query: 83  TRMNSMNSSCISGLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSPS 135
               S N   I GL+D G     +S+ G HEWTSPF GKD+FSLPRQFV+SPS
Sbjct: 610 RTAASGNGVRIPGLQDNGVANAETSATGSHEWTSPFEGKDLFSLPRQFVSSPS 662