Jatropha Genome Database

JcCB0121431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0121431.10 + phase: 0 
         (188 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30003.m000321 conserved hypothetical protein                          120   3e-28
30003.m000322 conserved hypothetical protein                          117   2e-27
29780.m001388 conserved hypothetical protein                           84   4e-17
30147.m013959 conserved hypothetical protein                           59   2e-09

>30003.m000321 conserved hypothetical protein
          Length = 168

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 18/185 (9%)

Query: 1   MSEPEISKALPITTLILRVFAMLLLLTSVIILATDSATFKALLSSQEVTMRLKYIYSYRY 60
           M+ P  S A  +  LILR+   + L+ S++IL T++AT +  L   EV +  K +Y+YRY
Sbjct: 1   MAPPPPSLASRMAALILRILTFIFLIASLVILTTNTATLE--LDLVEVKVHFKDVYAYRY 58

Query: 61  MLSAAVIGIAYTFFQLPFAIYHISTGKRLIKNVAAIYFDFFSDKVILCFLASGVGAGFGA 120
           ML+  VIG+AYT  Q+ F +Y+++TG R++     + FDFF DKVI   L +G  AGF +
Sbjct: 59  MLATIVIGLAYTVLQIAFTLYYVATGNRMMSGDGNLAFDFFGDKVISYILVTGAAAGFAS 118

Query: 121 TYDLKENLDQLDDIFKKLGSNLLSEFRTQMDDFFTMGYVSATLLLLGFLCFGVSSLLSFL 180
           T D+K        +F   G           D F   GY SA+LLL+GF+C  V S+ S  
Sbjct: 119 TKDIKP-------VFSGSG---------DFDAFINKGYASASLLLIGFVCTAVLSVFSSY 162

Query: 181 TLFKR 185
            L K+
Sbjct: 163 ALPKQ 167


>30003.m000322 conserved hypothetical protein
          Length = 181

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 101/177 (57%), Gaps = 16/177 (9%)

Query: 6   ISKALPITTLILRVFAMLLLLTSVIILATDSATFKALLSSQEVTMRLKYIYSYRYMLSAA 65
           +S A     L+LRV   + LL S+IIL +D+A+    L   EV    K + SYR+ML+  
Sbjct: 8   LSNASRKAPLVLRVLTFIFLLASLIILISDTASLVVKL--DEVNFHFKDVISYRFMLATI 65

Query: 66  VIGIAYTFFQLPFAIYHISTGKRLIKNVAAIYFDFFSDKVILCFLASGVGAGFGATYDLK 125
           VIG+AYT  Q+ F IYH +TGK ++     + F+ + DKVI   LA+GV AGFG + DLK
Sbjct: 66  VIGMAYTIMQVVFRIYHATTGKSVLSGDGNLLFEMYGDKVISYILATGVAAGFGVSVDLK 125

Query: 126 ENLDQLDDIFKKLGSNLLSEFRTQMDDFFTMGYVSATLLLLGFLCFGVSSLLSFLTL 182
                   IF+ LG+        ++  FF  GY SA LLL+GFLC  +SS+    TL
Sbjct: 126 P-------IFEDLGAG-------EVVAFFDKGYASAGLLLIGFLCMAISSVCVSYTL 168


>29780.m001388 conserved hypothetical protein
          Length = 182

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 96/172 (55%), Gaps = 6/172 (3%)

Query: 7   SKALPITTLILRVFAMLLLLTSVIILATDSATFKALLSSQEVTMRLKYIYSYRYMLSAAV 66
           SK++ ++ +++R+  +  L  ++++L T+   F++ + + +       + +YR++ +A+ 
Sbjct: 3   SKSILVSCVVIRLLTLGALAAAIVVLVTNQ--FRSNIDNSKTI--FTDVIAYRFVFAASA 58

Query: 67  IGIAYTFFQLPFAIYHISTGKRLIKNVAAIYFDFFSDKVILCFLASGVGAGFGATYDLKE 126
           +G  YT  QLPFA+Y+    KRLI+N      DF+ DK++   LA G GAG   T +LK 
Sbjct: 59  LGCLYTLIQLPFALYYAYKEKRLIQNDFLPNLDFYGDKMVAIVLACGAGAGLAVTLELKG 118

Query: 127 NLDQLDDIFKKLGSNLLSEFRTQMDDFFTMGYVSATLLLLGFLCFGVSSLLS 178
            L +  + F  +    + E R++   F   GY+++ LLLLG  C  + S+ S
Sbjct: 119 ILKEYYNDFSDIPG--IDEQRSKSIRFLNRGYIASGLLLLGCACMVILSVFS 168


>30147.m013959 conserved hypothetical protein
          Length = 306

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 27/173 (15%)

Query: 12  ITTLILRVFAMLLLLTSVIILATDSATFKALLSSQEVTMRLKYIYSYRYMLSAAVIGIAY 71
           +  L  R+  ++L L S  ++A D    K    S +   R +    YRY LS  VI   Y
Sbjct: 157 VAELGFRISEVVLCLISFSVMAAD----KTQGWSGDSYDRYR---EYRYCLSVNVIAFVY 209

Query: 72  TFFQLPFAIYHISTGKRLIKNVAAIYFDFFSDKVILCFLASGVGAGFGATYDLKENLDQL 131
           + FQ     YH++TGK +I +    +F+FF D+++   L S   +   AT        ++
Sbjct: 210 SGFQAYDLSYHLATGKHVIGHHLRRHFNFFMDQILAYLLISASSS--AAT--------RV 259

Query: 132 DDIFKKLGSNLLSEFRTQMDDFFTMGYVSATLLLLGFLCFGVSSLLSFLTLFK 184
           DD     G           D+F  M   S  + LL F+ F VSSL+S   L+ 
Sbjct: 260 DDWQSNWGK----------DEFTEMATASVAMALLAFIAFAVSSLISGYNLYN 302