Jatropha Genome Database

JcCB0121351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0121351.20 + phase: 0 
         (142 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m009049 longevity assurance factor, putative                     63   4e-11
30138.m003858 hypothetical protein                                     56   6e-09

>30174.m009049 longevity assurance factor, putative
          Length = 308

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 35/47 (74%)

Query: 1  MGFLKTIGFLDWEYESDPTPSDFMIVPFFALFFPLVRLFLDTFIFEP 47
          MG + T GF++WE ES P   DF  VPFFALFFP VRLFLDT++FE 
Sbjct: 1  MGVVGTNGFINWESESYPEAIDFSAVPFFALFFPSVRLFLDTYVFEK 47


>30138.m003858 hypothetical protein
          Length = 64

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 1  MGFLKTIGFLDWEYESDPTPSDFMIVPFFALFFPLVRLFLDTFIFE 46
          MG L  +  ++WEYES P   D++++P FALFFP VR FLD F+F+
Sbjct: 1  MGVLDYVKSIEWEYESYPAYEDYIVLPLFALFFPTVRFFLDRFVFQ 46