Jatropha Genome Database

JcCB0119431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0119431.10 - phase: 1 /TE
         (1413 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30119.m000594 conserved hypothetical protein                           50   9e-06

>30119.m000594 conserved hypothetical protein
          Length = 184

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 24/162 (14%)

Query: 3   FPLKLSPQNYPSWRAQIVPVLRGHNLLGYVDRS-LPCPSPIISKD-GEDIANPDYEHWIC 60
           F +KL+ +NY  W+ Q  P+   + L G  + + +  P  II  +  + I NP+Y  W  
Sbjct: 37  FSIKLTSKNYIPWKLQFTPLFNLY-LHGIANGTEVAPPREIIDSNVNQSILNPEYTAWFA 95

Query: 61  QDXLXXXXXXXXXXXXXXXXXXNAETAADAWDKVQTTCANKSATRVLSLREKLSNCKRDS 120
           +D L                       ++ W  + +     S  +   L  +L N  +D 
Sbjct: 96  KDQLLF---------------------SEVWRALASAYGVVSHAQRTQLHIELQNLSKDE 134

Query: 121 KSVQEYLQNITVISDALALSGSPVSDVDLVINTLNGIGSDFR 162
           K V +YL     I+D+L  +G  +S  +        +G+++R
Sbjct: 135 KPVSQYLYQAKAIADSLTSAGQAISTSEFNAIIFRKLGAEYR 176