Jatropha Genome Database

JcCB0118121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0118121.10 + phase: 2 /pseudo/partial
         (645 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29638.m000503 mom(plant), putative                                     80   4e-15

>29638.m000503 mom(plant), putative
          Length = 1982

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 7/96 (7%)

Query: 125 INSREDELNNGN----MKIHDSADVAKLKEILAPYTAYECKSDSFCYEEYWVPVQLSNVQ 180
           +N  + +LN+ N    +    S  +  LKE L+ Y     KSDS  + EYWVPVQ+SN+Q
Sbjct: 365 VNKLKSKLNDMNGFASLSTKSSHKMGNLKERLSKYIVNGSKSDSLKFVEYWVPVQISNIQ 424

Query: 181 LEQYCAVLLSNPVLL---FKNDTVDALREIIISIRK 213
           LEQYCA L SN + L    KND V AL +I++SIRK
Sbjct: 425 LEQYCATLFSNSLFLCSSSKNDLVGALSDILVSIRK 460



 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 3/140 (2%)

Query: 279 KLKVFRLYSRYTVEERALIHAKKSGSNEINVDYMNRDSCYSLLGWGLARLFNKLDDFHQC 338
           +LKVFRLYS +TVEE  LI AK     + NV  ++R +  SLL  G + LF KLD+F   
Sbjct: 622 QLKVFRLYSSFTVEENVLILAKHDKILDSNVQSISRATTQSLLMRGASYLFRKLDEFQNS 681

Query: 339 KTLASGSKIYSEWPFLDNVLQELLDQLLCNRED-EPSIYSFISKAQQDAGAYTREISVID 397
             L +      +     +V+++ L  L  + +D   S +S I KA+ + G Y  +  +  
Sbjct: 682 SILNTNRSSSFDESSEKDVIRDFLTILSQDAKDNNSSTFSVIVKAKLNQGTYVSDPPLPG 741

Query: 398 EK--EVQDTGPPALFWDKIF 415
           E+  +V+D   P  FW K+ 
Sbjct: 742 ERKSQVRDEEFPHRFWKKLL 761