Jatropha Genome Database

JcCB0117851.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0117851.20 + phase: 0 /partial
         (59 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29696.m000106 actin binding protein, putative                          92   4e-20
29848.m004543 DNA binding protein, putative                            88   7e-19
29827.m002590 conserved hypothetical protein                           82   5e-17
30138.m004035 conserved hypothetical protein                           80   2e-16

>29696.m000106 actin binding protein, putative
          Length = 1191

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/47 (91%), Positives = 46/47 (97%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           SSVLALED+ALDVDQ++NLIKFCPTKEEMELLKGY GEKEKLGKCEQ
Sbjct: 876 SSVLALEDTALDVDQLENLIKFCPTKEEMELLKGYIGEKEKLGKCEQ 922


>29848.m004543 DNA binding protein, putative
          Length = 1266

 Score = 88.2 bits (217), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 45/47 (95%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           S++LA++DS LDVDQVDNLIKFCPTKEEMELLKGY+G+K+ LGKCEQ
Sbjct: 947 SAILAMDDSVLDVDQVDNLIKFCPTKEEMELLKGYSGDKDNLGKCEQ 993


>29827.m002590 conserved hypothetical protein
          Length = 231

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 43/47 (91%)

Query: 1   SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
           ++VLAL+ SALD+DQV+NLIKFCPTKEEME LK YTG+KE LGKCEQ
Sbjct: 73  NAVLALDSSALDIDQVENLIKFCPTKEEMETLKNYTGDKEMLGKCEQ 119


>30138.m004035 conserved hypothetical protein
          Length = 1550

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 43/47 (91%)

Query: 1    SSVLALEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQ 47
            ++VLA+++S LD DQV+NLIKFCPTKEEMELLK Y+G+KE LGKCEQ
Sbjct: 1242 AAVLAMDESILDADQVENLIKFCPTKEEMELLKNYSGDKENLGKCEQ 1288