Jatropha Genome Database

JcCB0115521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115521.10 - phase: 0 
         (146 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29780.m001377 lipid binding protein, putative                         178   8e-46
30143.m001220 lipid binding protein, putative                          85   1e-17

>29780.m001377 lipid binding protein, putative
          Length = 120

 Score =  178 bits (452), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query: 33  NMRDCLATFLALLIASNAFIGDVNAAGECGKTPIRSAAISLNPCLLAAGNAKASVPPACC 92
           +MR C A  L  L+ASN F+ DV+AAGECGKTPIRSAA SL+PCL A GN +ASVPPACC
Sbjct: 4   SMRACFAAVLVFLLASNGFLSDVDAAGECGKTPIRSAAASLSPCLTAVGNVRASVPPACC 63

Query: 93  SKVGALINTAPKCLCAIILSPLAKQSGINPGIAITIPKRCNIKNRPAGKKCG 144
           SKVGALI TAPKCLCA++LSPLA Q+GI PGIAITIPKRCNIKNRP GKKCG
Sbjct: 64  SKVGALIKTAPKCLCAVLLSPLAMQAGIKPGIAITIPKRCNIKNRPVGKKCG 115


>30143.m001220 lipid binding protein, putative
          Length = 119

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 63/110 (57%), Gaps = 4/110 (3%)

Query: 37  CLATFLALLIASNAFIGDVNAAGECGK-TPIRSAAISLNPCLLAAGNAKASVPPACCSKV 95
           C   FL LL    A    V+ AGECG+ T     A  L PC  AA +  + V   CC++V
Sbjct: 9   CFVMFLVLL--GVAGFNRVDGAGECGRSTTPDMEAFKLAPCASAAQDTTSPVSSQCCAQV 66

Query: 96  GALINTAPKCLCAIILSPLAKQSGINPGIAITIPKRCNIKNRPAGKKCGS 145
             +    P CLCA++LS  AK SG+ P  AITIPKRCNI NRP G KCG+
Sbjct: 67  KKM-GQNPPCLCAVMLSNTAKSSGVQPENAITIPKRCNIANRPVGYKCGA 115