Jatropha Genome Database

JcCB0115061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115061.10 - phase: 0 /partial
         (81 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30078.m002288 Transcription factor Dp-1, putative                     153   1e-38

>30078.m002288 Transcription factor Dp-1, putative
          Length = 360

 Score =  153 bits (387), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/81 (88%), Positives = 77/81 (95%), Gaps = 1/81 (1%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGE 60
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSD +APN+A DGGE
Sbjct: 259 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDSVAPNLANDGGE 318

Query: 61  GSSMSNMYQQQIHPSPGTSTP 81
           GSSMS++YQQQI  SPGT+TP
Sbjct: 319 GSSMSHVYQQQIL-SPGTNTP 338