Jatropha Genome Database

JcCB0113371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0113371.20 - phase: 0 /partial
         (197 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30040.m000265 nuclear matrix protein, putative                        328   8e-91

>30040.m000265 nuclear matrix protein, putative
          Length = 608

 Score =  328 bits (842), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 157/197 (79%), Positives = 168/197 (85%)

Query: 1   NALTDPQRVRTPSITEYWKPLAEDMDPSAGIEAEYHHKNNRVYCWKGLRFSARQDLDGFS 60
           NALTDPQRVRTP+ITEYWKPLAEDMDPSAGIEAEYHHKNNRVYCWKGLRFSARQDLDGFS
Sbjct: 412 NALTDPQRVRTPAITEYWKPLAEDMDPSAGIEAEYHHKNNRVYCWKGLRFSARQDLDGFS 471

Query: 61  RFTDHGIEGVVPLELLPPDVRSKYQAKPNDRSKRAKKEEVKGASNQAEDNQITTPASVLD 120
           RFTDHGIEGVVPLELLPPDVRSKYQAKPNDRSKRAKK+++KG SNQ E+NQI TPAS +D
Sbjct: 472 RFTDHGIEGVVPLELLPPDVRSKYQAKPNDRSKRAKKDDIKGGSNQTEENQIATPASEID 531

Query: 121 GEGIRTDEXXXXXXXXXXXXXXXXXXQGGTPTPEEHQKQSPDTDGGQEAGQLEADGEGDA 180
           GEGIR DE                  QGGTPTP+E Q+QSPD D GQEAG LEADGE +A
Sbjct: 532 GEGIRADEAAAAPMDTDAMATAGSTSQGGTPTPDERQRQSPDADDGQEAGHLEADGEVEA 591

Query: 181 ALIDGETDAEVDLEAVS 197
            +IDGETDAEVDLEA+S
Sbjct: 592 GMIDGETDAEVDLEAIS 608