Jatropha Genome Database

JcCB0113371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0113371.10 + phase: 2 /partial
         (182 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30040.m000264 orf protein, putative                                   337   3e-93

>30040.m000264 orf protein, putative
          Length = 186

 Score =  337 bits (863), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 160/165 (96%), Positives = 161/165 (97%)

Query: 9   LEYFAVSNGHVKRPHDEDIQSNVLEIVGSNIQSTYITCPVDPAATLGIKLPFLVMIVKNL 68
           LE  AVSNGHVKRPHDEDIQSNVLEIVGSNIQSTYITCP DPAATL IKLPFLVMIVKN+
Sbjct: 20  LESSAVSNGHVKRPHDEDIQSNVLEIVGSNIQSTYITCPADPAATLSIKLPFLVMIVKNM 79

Query: 69  KKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLKMDEGWNQIQLNLADFTRRA 128
           KKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLKMDEGWNQIQLNLADFTRRA
Sbjct: 80  KKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLKMDEGWNQIQLNLADFTRRA 139

Query: 129 YGTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQ 173
           YGTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQ
Sbjct: 140 YGTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPEFKLYLPMQ 184