Jatropha Genome Database

JcCB0112721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0112721.10 - phase: 0 /pseudo
         (329 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008887 nucleotide binding protein, putative                    454   e-128

>30174.m008887 nucleotide binding protein, putative
          Length = 438

 Score =  454 bits (1167), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/300 (74%), Positives = 248/300 (82%), Gaps = 4/300 (1%)

Query: 1   MDPVLPIAVLSVLLGALIAFLFFKSYSHKRESEIKSITKPELDSAPKKPTKPAQPVTXXX 60
           MDPVLPIA++S+LLGALIA LFFKSY  KR+SEIKSI  PEL S PKKPTK +QPVT   
Sbjct: 1   MDPVLPIAIVSILLGALIAILFFKSYFLKRKSEIKSIAPPELRSDPKKPTKHSQPVTKKS 60

Query: 61  XXXXXXXXXXASDKDQIKRHHPLDLNTLKGHGDSVNGLCFSNDGRSLATACGDGVVRVFK 120
                     A+DK+Q +RHHPLDLNTLKGHGD+V GLCFSNDGRSLATAC DGVVRVFK
Sbjct: 61  HSKPHSH---AADKEQNRRHHPLDLNTLKGHGDAVTGLCFSNDGRSLATACADGVVRVFK 117

Query: 121 LDDASSKSFKFLRISVPAGGHPXXXXXXXXXXXXXXXXQTLSGASLYMFGEEKVKP-NES 179
           LDDASS+SFKFLRI++PAGG P                QTLSGASLY++GEE  KP N+S
Sbjct: 118 LDDASSRSFKFLRINLPAGGIPVAVTFSDDASSVVVASQTLSGASLYLYGEENPKPSNDS 177

Query: 180 KQQSKLPLPEVKWEHHKIHDKNAVLTLVGTAATYGTADGSAIVASCSEATDIKLWYGRTG 239
           KQQ KLPLPE+KWEH KIH+  AV+TLVGT ATYG+ADGS+IVASCSE TDIKLW+G+TG
Sbjct: 178 KQQPKLPLPEIKWEHRKIHENKAVITLVGTVATYGSADGSSIVASCSEGTDIKLWHGKTG 237

Query: 240 KILGNVDTNQLKNTMATVSPNGRFIAAAAFTADVKVWEIVYSKDGSVKEVPKVMQLKGHK 299
            ILGNVDTNQLKNTMA +SPNGRF+AAAAFTADVKVWEI+YSKDGSVKEVPKVMQLKGHK
Sbjct: 238 NILGNVDTNQLKNTMAAISPNGRFVAAAAFTADVKVWEIIYSKDGSVKEVPKVMQLKGHK 297