Jatropha Genome Database

JcCB0112461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0112461.20 - phase: 1 /partial
         (150 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002456 NAD dependent epimerase/dehydratase, putative            96   7e-21

>29851.m002456 NAD dependent epimerase/dehydratase, putative
          Length = 584

 Score = 95.9 bits (237), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 56/68 (82%)

Query: 72  SPYAIYDDLKPPTSPIPAAPLVSIPTSSENGGPKAGNSAPPTAPEDMQQHTEAKPKPLSP 131
           SP+ +YDDLKPPTSP P AP+ S+P SS N  PKAGNSAPPTAP + QQ+ E KP+PLSP
Sbjct: 507 SPFLVYDDLKPPTSPSPIAPVGSVPPSSTNEVPKAGNSAPPTAPVEKQQNAEPKPRPLSP 566

Query: 132 FSMYEDMK 139
           ++MYEDMK
Sbjct: 567 YTMYEDMK 574



 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/48 (64%), Positives = 37/48 (77%)

Query: 43  DEGSKVGNSAPILAPEEEQQHTEAKPRPLSPYAIYDDLKPPTSPIPAA 90
           +E  K GNSAP  AP E+QQ+ E KPRPLSPY +Y+D+KPPTSP PA 
Sbjct: 536 NEVPKAGNSAPPTAPVEKQQNAEPKPRPLSPYTMYEDMKPPTSPSPAG 583