Jatropha Genome Database

JcCB0111501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0111501.20 + phase: 0 /pseudo
         (151 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010889 coatomer gamma subunit, putative                        255   5e-69

>30190.m010889 coatomer gamma subunit, putative
          Length = 887

 Score =  255 bits (652), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 131/145 (90%), Positives = 142/145 (97%)

Query: 1   MAQPLIKKDDDRDDEAEFSPFLGIEKGAVLQEARVFNDPQLDPRKCSQVITKLLYLLNQG 60
           MAQPLIKKDDDRDDEA++SPFLGIEKGAVLQEARVFNDPQLD RKCSQVITK+LYLLNQG
Sbjct: 1   MAQPLIKKDDDRDDEADYSPFLGIEKGAVLQEARVFNDPQLDSRKCSQVITKILYLLNQG 60

Query: 61  ETFTKVEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKSD 120
           ++ +K+EATEVFF+VTKLFQSRD+ LRRMVYL+IKELSPSADEVIIVTSSLMKDMNSK+D
Sbjct: 61  DSLSKIEATEVFFSVTKLFQSRDLALRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTD 120

Query: 121 MYRANAIRVLCRITDGTLLTQIERY 145
           MYRANAIRVLCRITDGTLLTQIERY
Sbjct: 121 MYRANAIRVLCRITDGTLLTQIERY 145