Jatropha Genome Database

JcCB0111121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0111121.10 - phase: 0 /partial
         (163 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005304 Cell growth-regulating nucleolar protein, putative      235   7e-63

>29912.m005304 Cell growth-regulating nucleolar protein, putative
          Length = 312

 Score =  235 bits (599), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 114/163 (69%), Positives = 120/163 (73%), Gaps = 6/163 (3%)

Query: 1   MVWFQCEDCGENLKKPKLPNHFRICSASKLSCIDCGEMFGQDSVQGHTQCITEAEKYGPK 60
           MVWFQCEDCGENLKKPKLPNHFRICSA+KLSCIDCGEMFGQD VQGHTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGENLKKPKLPNHFRICSATKLSCIDCGEMFGQDRVQGHTQCITEAEKYGPK 60

Query: 61  GQGKAPNGATPKTNKNAKQQPDVDINVGLSERPPWFCSLCNTKATSKQTLLLHADGXXXX 120
           GQGK  NGATPK+NK  +Q PDVDI VGLS+RPPWFCSLCNT ATSKQTLLLHADG    
Sbjct: 61  GQGKISNGATPKSNKK-QQHPDVDITVGLSDRPPWFCSLCNTSATSKQTLLLHADGKKHR 119

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXPSTVQITTNGELQDNKHVE 163
                                    +    TTNGEL DNK +E
Sbjct: 120 AKARAIHAAKQQQAKQTEES-----AATGNTTNGELHDNKQME 157