Jatropha Genome Database

JcCB0110871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0110871.10 + phase: 0 /partial
         (315 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30068.m002596 Ubiquitin carboxyl-terminal hydrolase, putative         466   e-132
28515.m000319 Ubiquitin carboxyl-terminal hydrolase, putative         246   7e-66
29854.m001132 Ubiquitin carboxyl-terminal hydrolase, putative         203   8e-53
29333.m001069 conserved hypothetical protein                           83   2e-16
29848.m004520 Ubiquitin carboxyl-terminal hydrolase, putative          62   4e-10
27394.m000349 Ubiquitin carboxyl-terminal hydrolase, putative          58   5e-09
29904.m002934 conserved hypothetical protein                           58   7e-09
29696.m000102 conserved hypothetical protein                           56   2e-08
30202.m000255 cysteine-type endopeptidase, putative                    52   3e-07
29908.m006248 conserved hypothetical protein                           50   1e-06

>30068.m002596 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 938

 Score =  466 bits (1198), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/273 (80%), Positives = 245/273 (89%)

Query: 1   RKMISQGAFTKKQFNVEVFPLSLKVIDSRDDCEFTIRLSKKASLHELYERVCTLRGIERD 60
           RKMISQG   KKQFNVEV+PL LK++DSRDD EFTIRLSKKASLH+L+ERVC L+G +++
Sbjct: 146 RKMISQGVSNKKQFNVEVYPLCLKLVDSRDDSEFTIRLSKKASLHQLFERVCALKGTKQE 205

Query: 61  KTIIWDYFNKHKNSRLVDSNRTLEESNLQMDQEILLELQVGVPYPSQSGKDSTGNELALV 120
           K IIWDY+NK ++S+L+ +NRTLEESNLQMDQEILLE+Q   PY SQSGKDSTGNELALV
Sbjct: 206 KIIIWDYYNKRRHSQLIAANRTLEESNLQMDQEILLEVQGDGPYLSQSGKDSTGNELALV 265

Query: 121 TMEPSRTSLSIAGGPSLSNGHSSTYSLNLRPGSALNAGFTDIDLGFGAQTAVRRGERGGL 180
            +EP+RTSLSIAGGP+LSNGHSSTY LNLRPG AL+ GFTD D   GA TAVRR ERGGL
Sbjct: 266 ALEPARTSLSIAGGPTLSNGHSSTYGLNLRPGGALSTGFTDNDDASGAYTAVRRSERGGL 325

Query: 181 AGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLRKL 240
           AGLQNMGNTCFMNSALQCLVHTPPL +YFL+DYS+EIN ENPLGMHGELALAFGDLLRKL
Sbjct: 326 AGLQNMGNTCFMNSALQCLVHTPPLVDYFLKDYSDEINAENPLGMHGELALAFGDLLRKL 385

Query: 241 WSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
           WSSGR+T APR FKGKLALFAPQFSGYNQHDSQ
Sbjct: 386 WSSGRTTFAPRVFKGKLALFAPQFSGYNQHDSQ 418


>28515.m000319 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 942

 Score =  246 bits (629), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/273 (45%), Positives = 181/273 (66%), Gaps = 1/273 (0%)

Query: 1   RKMISQGAFTKKQFNVEVFPLSLKVIDSRDDCEFTIRLSKKASLHELYERVCTLRGIERD 60
           RK+I  G  ++ +  VEV+PL L+++        TIR+SKK ++ +L++R C +  +  +
Sbjct: 142 RKVICSG-LSRTELAVEVYPLRLQLLVMPKGDRSTIRISKKETIGQLHKRACEIFDLNSE 200

Query: 61  KTIIWDYFNKHKNSRLVDSNRTLEESNLQMDQEILLELQVGVPYPSQSGKDSTGNELALV 120
           +  IWDY+ + K++ + D ++TL+++N+QMDQ+IL+E+   V   + +G  ++  +    
Sbjct: 201 QLRIWDYYGQRKHALMNDMDKTLDDANIQMDQDILVEVLNNVNGTALNGCMNSILDKGST 260

Query: 121 TMEPSRTSLSIAGGPSLSNGHSSTYSLNLRPGSALNAGFTDIDLGFGAQTAVRRGERGGL 180
            +    + LSIAGG S S G S +    +  G  L +   ++D  +GA     RG  GGL
Sbjct: 261 EIYSEESYLSIAGGLSASKGGSRSCIAEVPQGQNLISPGGELDNTYGATGVSTRGSSGGL 320

Query: 181 AGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLRKL 240
            GLQN+GNTCFMNSA+QCLVHTP   +YF +DY +EIN +NPLGM GELA+AFG+LLRKL
Sbjct: 321 TGLQNLGNTCFMNSAIQCLVHTPEFVKYFREDYHQEINWQNPLGMVGELAIAFGELLRKL 380

Query: 241 WSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
           W+ GR+ + PR FK KLA FAPQFSGYNQHDSQ
Sbjct: 381 WAPGRAPVPPRQFKAKLARFAPQFSGYNQHDSQ 413


>29854.m001132 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 889

 Score =  203 bits (517), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 116/261 (44%), Positives = 156/261 (59%), Gaps = 24/261 (9%)

Query: 17  EVFPLSLKVIDSRDDCEFTIRLSKKASLHELYERVCTLRGIERDKTIIWDYFNKHKNSRL 76
           +V+PL L++   R+     +++SKK +  EL+ R C +  ++ +   IWD+  +     +
Sbjct: 141 DVYPLQLRLSVLREVNSLGVKISKKENATELFRRACKIFSVDSEMLRIWDFSGQTTLFFV 200

Query: 77  VDSNRTLEESNLQMDQEILLELQVGVPYPSQSGKDSTGNELALVTMEPSRTSLSIAGGPS 136
            D +++ +ES  Q+DQEI+LELQV     +   +D   ++        + +S     G S
Sbjct: 201 NDKSKSPKESQRQLDQEIVLELQVYGLSDNMKCRDGKKDDAVAQNCNGTHSS-----GTS 255

Query: 137 LSNGHSSTYSLNL--RPGSALNAGFTDIDLGFGAQTAVRRGERG--GLAGLQNMGNTCFM 192
           L NG  S  S +      SAL          FG     + GE G  GL GLQN+GNTCFM
Sbjct: 256 LMNGSVSNTSTSFFRCDSSAL----------FG-----KSGEAGSLGLTGLQNLGNTCFM 300

Query: 193 NSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLRKLWSSGRSTIAPRA 252
           NSA+QCL HTP L +YFL DY  EIN +NPLGM GE+ALAFGDLLRKLW+ G + +APR 
Sbjct: 301 NSAIQCLAHTPKLVDYFLGDYGREINHDNPLGMDGEIALAFGDLLRKLWAPGATPVAPRT 360

Query: 253 FKGKLALFAPQFSGYNQHDSQ 273
           FK KLA FAPQFSG+NQHDSQ
Sbjct: 361 FKSKLARFAPQFSGFNQHDSQ 381


>29333.m001069 conserved hypothetical protein
          Length = 359

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 19/196 (9%)

Query: 17  EVFPLSLKVIDSRDDCEFTIRLSKKASLHELYERVCTLRGIERDKTIIWDYFNKHKNSRL 76
           +VFPL +++  S +     +++S K +    Y R C +   + +   IWD F++      
Sbjct: 175 DVFPLQIRLSVSPETNSLIVKISLKENEVAFYRRACNIFFSKNEVLHIWD-FSRQTTQVF 233

Query: 77  VDSNRTLEESNL-QMDQEILLELQV-GVPYPSQSGKDSTGNELALVTMEPSRTSLSIAGG 134
           +     L   ++ Q  +E+L+EL+V G P  S   +D   +E+A    E S T  S + G
Sbjct: 234 MKVKIDLPNCSMGQSAEEVLVELEVYGFP-DSIKVRDRKIDEMA----ENSVTDGSFSTG 288

Query: 135 PSLSNGHSSTYSLNLRPGSALNAGFTDIDLGFGAQTAVRRGERGGLAGLQNMGNTCFMNS 194
               NG S   S    P ++  +G            + RR    GLAGL+N+GNTCFMNS
Sbjct: 289 LVKMNGSSDLMSFCSTPTNSSLSG-----------CSYRRFGYLGLAGLRNLGNTCFMNS 337

Query: 195 ALQCLVHTPPLAEYFL 210
           A+QCL HT  L +YF+
Sbjct: 338 AIQCLAHTAKLVDYFI 353


>29848.m004520 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 551

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 161 DIDLGFGAQTAVRRGERG------GLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYS 214
           ++DL    Q  + R  R       GL GL N+G+TCFMNS LQ L+H PP   YFL D  
Sbjct: 153 ELDLKKSKQLVLMRDRREKSCYPLGLRGLNNLGSTCFMNSVLQALLHAPPFRNYFLSDRH 212

Query: 215 EEINTENPLGMHGELALAFGDLLRKLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
           +             LA     ++  L+S  R+  +P  F       +   + Y Q D+ 
Sbjct: 213 DRDTCRKRSLDRLCLACNIDVIISALYSGDRTPYSPAQFLYSWWQHSANLASYEQQDAH 271


>27394.m000349 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 577

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 27/34 (79%)

Query: 179 GLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQD 212
           GL GL N+GNTCFMNS LQ L+HTPPL  YFL D
Sbjct: 185 GLRGLNNLGNTCFMNSVLQALLHTPPLRNYFLSD 218


>29904.m002934 conserved hypothetical protein
          Length = 1006

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 14/97 (14%)

Query: 180 LAGLQNMGNTCFMNSALQCLVHTPPLAEYFL-QDYSEEINTENPLGMHGELALAFGDLL- 237
           + GL N+GNTCF NS +Q L+    L ++F  QD S            G L +A   L  
Sbjct: 230 VRGLVNLGNTCFFNSVMQNLLAIDKLRDFFFNQDIS-----------FGPLTIALKKLFT 278

Query: 238 -RKLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
             K  +  ++ I+PR+F G +   APQF GY Q DS 
Sbjct: 279 ETKQETGIKNVISPRSFFGSICSKAPQFRGYQQQDSH 315


>29696.m000102 conserved hypothetical protein
          Length = 834

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 181 AGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLRKL 240
           AGL+N+GNTCF+NS LQCL +T PLA Y     S +  T   +     L      + R L
Sbjct: 7   AGLENLGNTCFLNSVLQCLTYTEPLAAYL---QSGKHQTSCHIAGFCALCAIQKHVSRAL 63

Query: 241 WSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
            S+GRS + P+     L   +  F    Q D+ 
Sbjct: 64  QSTGRS-LVPKDLVSNLRCISRNFRNARQEDAH 95


>30202.m000255 cysteine-type endopeptidase, putative
          Length = 644

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 5/104 (4%)

Query: 173 RRGERGGLAGLQNMGNTCFMNSALQCLVHTPPLAEYFLQ-DYSEEINTENPLGMHGELAL 231
           +R  R  L GL+N+GN+C++NS LQCL +TPPLA + L+  +S   ++ +      E   
Sbjct: 17  KRKNRPPL-GLRNLGNSCYLNSVLQCLTYTPPLANFCLRLQHSSLCDSVSNGERKRECPF 75

Query: 232 AFGD--LLRKLWSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
              +  ++R L S   +  AP   +  L +FA  F G  Q D+ 
Sbjct: 76  CILEKRIVRSL-SLDLTLDAPAKIQSCLKIFAEHFKGGQQEDAH 118


>29908.m006248 conserved hypothetical protein
          Length = 1060

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 181 AGLQNMGNTCFMNSALQCLVHTPPLAEYFLQDYSEEINTENPLGMHGELALAFGDLLRKL 240
            GL N GN+C+ N+ LQCL  TPPL  YF+Q     ++++  +         F  L+ K 
Sbjct: 523 CGLINCGNSCYANAVLQCLAFTPPLTAYFVQG----LHSKECVNKEWCFTCEFESLMLKA 578

Query: 241 WSSGRSTIAPRAFKGKLALFAPQFSGYNQHDSQ 273
              G+S ++P     +L   A Q     + D+ 
Sbjct: 579 -KEGKSPLSPIGILSQLQNIASQLGTGREEDAH 610