Jatropha Genome Database

JcCB0110731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0110731.10 + phase: 0 /partial
         (503 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29820.m001006 breast cancer type 2 susceptibility protein brca2,...   790   0.0  

>29820.m001006 breast cancer type 2 susceptibility protein brca2,
           putative
          Length = 1156

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/506 (75%), Positives = 434/506 (85%), Gaps = 3/506 (0%)

Query: 1   DAVDDEKFGGLNNTISSIQKPLSNGSSGLDMLDDNSSAIGNGLRINTLARSSRGPLVDIS 60
           DAVDD++F GLN T+SS+QKPL NG    D ++DNS A G G RIN LARSS GPLVDIS
Sbjct: 342 DAVDDKRFLGLNGTLSSMQKPLCNGPCEPDAVEDNSLAHGIGSRINLLARSSSGPLVDIS 401

Query: 61  NTLGTSCTNHRRVNNEKRKLGRGTSISQFKRPRSSKFIIPLNKNVSYVLNGLSTSSSENS 120
           NT+G+  TNHR  N EK+++GR +S S FKRPRS KF  PLN+N +Y  +GLS SSSENS
Sbjct: 402 NTIGSCYTNHRHDNIEKKRVGRRSSTSPFKRPRSCKFTTPLNRNYAYAPSGLSASSSENS 461

Query: 121 CCRRTVSTRYPFRTPRMYIKEYFEVPSSDKNMLEHFTDQVGWIKPEAAEKYKFCDESGVN 180
             R ++STRYP++  RMYIK+YF VPS DK+MLEHF  QV  IKP+  EKY F DESG++
Sbjct: 462 GFRHSISTRYPYQGSRMYIKDYFRVPSFDKSMLEHFAGQVICIKPDTVEKYTFWDESGLS 521

Query: 181 CIGAEALYHMLVQSGASIQCVSKEWTMNHYKWIIWKLACYERCYPWKSATRFLTVSNVHE 240
            +G+EA + MLVQSGAS+Q  SKEW  NHYKWI+WKLACY R YP KSATRFLTVSNV E
Sbjct: 522 GLGSEAFHDMLVQSGASVQFASKEWVTNHYKWIVWKLACYGRFYPLKSATRFLTVSNVLE 581

Query: 241 ELKYRYEREVNHGHRSAIKRILEGDSPPSSMMVLCISAICISCKPKIENLALNGDECSNA 300
           ELKYRYEREVNHGHRSAIKRILEGD+PPSSM++LCISAI ISC+PKIE  AL+G + SNA
Sbjct: 582 ELKYRYEREVNHGHRSAIKRILEGDAPPSSMLILCISAIRISCQPKIETPALDGSDYSNA 641

Query: 301 ARMELTDGWYSIDALLDIPLSKQLSAGKLFVGQKIRIWGARLCGWAGPVSPLEILAS-RT 359
            ++ELTDGWYS+DA+LD+PLSKQL++GKLFVGQK+RIWGARLCGW GPVSPLE+L S RT
Sbjct: 642 EKVELTDGWYSVDAILDVPLSKQLASGKLFVGQKLRIWGARLCGWVGPVSPLEVLVSLRT 701

Query: 360 VSLLLHINGTYRAHWADRLGFCKGVGPPLAFRCIKNNGGPIPRTLVGVTRIYPILYKEKL 419
           VSLLLHINGTYRAHWADRLGFC GV PPLAFRCIK+NGGP+P+TLVGVTR+YP+LYKEKL
Sbjct: 702 VSLLLHINGTYRAHWADRLGFCNGVSPPLAFRCIKSNGGPVPQTLVGVTRLYPVLYKEKL 761

Query: 420 RDGGSIVRSERMEARTMQLYNQRHSAVVEGIVSEYQR--KGSHIYNDSDSEEGAKILKIL 477
            DGGSIVRSERMEA+ MQLY+QRHSAVVEGIVSE+QR  KGSHIYNDSDSEEGAKILKIL
Sbjct: 762 CDGGSIVRSERMEAKAMQLYSQRHSAVVEGIVSEFQREMKGSHIYNDSDSEEGAKILKIL 821

Query: 478 ETAADPEVIMAEMSPEQLNSFASCQA 503
           ETA++PEVIMAEMSPEQL SFAS QA
Sbjct: 822 ETASEPEVIMAEMSPEQLTSFASYQA 847