Jatropha Genome Database

JcCB0109661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109661.10 - phase: 0 
         (139 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29269.m000251 conserved hypothetical protein                          154   1e-38
30169.m006384 conserved hypothetical protein                          116   4e-27

>29269.m000251 conserved hypothetical protein
          Length = 139

 Score =  154 bits (390), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 96/138 (69%)

Query: 1   MGRGRGKGKKQTVIASHEDPSIGEDDQVPAYKRRGRPTKPLXXXXXXXXXXXXXXXXXXX 60
           M RGRGKGKKQ VIASHE P   ++++VPAY+RRGRP KP+                   
Sbjct: 1   MVRGRGKGKKQAVIASHEGPGSDKEEKVPAYRRRGRPMKPVDDDNGQEEEAASELNEDGK 60

Query: 61  XVNDSISNKDAKSLAATENGQKRKRPGHTSENADSVKEENDVRTKLSTDNSAVSGRFQQN 120
              D+I +KD KS + TENG+KRKRPGHT EN +SVKE+N V TKLST NS +S  F+Q 
Sbjct: 61  DAKDTIPSKDVKSQSPTENGRKRKRPGHTKENTNSVKEDNGVGTKLSTSNSTMSTGFRQI 120

Query: 121 GSRRKNKPRRAAEAVVEC 138
           GSRRKNKPRRAAEAVVEC
Sbjct: 121 GSRRKNKPRRAAEAVVEC 138


>30169.m006384 conserved hypothetical protein
          Length = 137

 Score =  116 bits (290), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 88/138 (63%), Gaps = 2/138 (1%)

Query: 1   MGRGRGKGKKQTVIASHEDPSIGEDDQVPAYKRRGRPTKPLXXXXXXXXXXXXXXXXXXX 60
           MGRGRGKGKK T   +++DP  GE++++PA KRRGRP KPL                   
Sbjct: 1   MGRGRGKGKKLTA-GNNDDPGSGEEEKIPAQKRRGRPQKPLKDDIDEEEVEKLEEEDGEN 59

Query: 61  XVNDSISNKDAKSLAATENGQKRKRPGHTSENADSVKEENDVRTKLSTDNSAVSGRFQQN 120
                +++K+ KS  A ENG+KRKR   + E +DS+KEEN V T+ STD+S  S  F+ N
Sbjct: 60  G-KACLTSKETKSPIAVENGKKRKRYSQSKEKSDSMKEENGVSTRSSTDDSTKSNGFRHN 118

Query: 121 GSRRKNKPRRAAEAVVEC 138
           GSRRK+KPRRAAEA VEC
Sbjct: 119 GSRRKSKPRRAAEAGVEC 136