Jatropha Genome Database

JcCB0109541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109541.20 + phase: 1 /pseudo/partial
         (79 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001424 Adipocyte plasma membrane-associated protein, puta...    60   2e-10
29830.m001423 Adipocyte plasma membrane-associated protein, puta...    53   3e-08

>29830.m001424 Adipocyte plasma membrane-associated protein,
          putative
          Length = 380

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 36/44 (81%), Gaps = 1/44 (2%)

Query: 1  AILIYQIDSFDPAFIPIHELTQPP-NVLMQNSHVLERSELLDKG 43
          +++ +Q+D FDPA +PIHELT+PP NVL +N+H+L+ SE L KG
Sbjct: 37 SVIFFQLDPFDPAPMPIHELTRPPANVLTKNAHILKGSEFLGKG 80


>29830.m001423 Adipocyte plasma membrane-associated protein,
          putative
          Length = 312

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 1  AILIYQIDSFDPAFIPIHELTQP-PNVLMQNSHVLERSELLDKG 43
          AIL+YQ+DSF+ A +PIHELT P P   M+N H+L+ SE L  G
Sbjct: 32 AILVYQLDSFESAPMPIHELTHPLPTPTMKNDHILKGSEFLGVG 75