Jatropha Genome Database

JcCB0109281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109281.10 - phase: 0 
         (237 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29727.m000490 conserved hypothetical protein                          272   1e-73

>29727.m000490 conserved hypothetical protein
          Length = 1088

 Score =  272 bits (695), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/176 (80%), Positives = 151/176 (85%), Gaps = 3/176 (1%)

Query: 1   METSP-SYFDPEDLTSREQFRRYGKRHSTSSVSPHKDISVSKFKESRLLYEGQSIHSPTN 59
           ME SP SYFDPEDLTSREQFRRYGKRHS SSVSPH+D SVSKFK+ RLLYEG SIHSPTN
Sbjct: 6   MEASPPSYFDPEDLTSREQFRRYGKRHSVSSVSPHQDASVSKFKDGRLLYEGHSIHSPTN 65

Query: 60  AALLLENIKQETDSIGYTDHFGGT-PARTHSTFKRRSSIDSYGISEVDLGADSVRRHGSE 118
           AALLLE+IKQE DSI  TDHF  T PA T S  KRR SID  GIS+ D G DS+ R GSE
Sbjct: 66  AALLLESIKQEADSID-TDHFESTPPAATKSASKRRPSIDIRGISDGDFGIDSIGRLGSE 124

Query: 119 SLKACKIEDDSLTDIGETIFGLFASLLDSAIQGLMPIPDLILRFEKSCRDVSESIR 174
           SLKACKIED+SLTD GET+FGLFASLLDSAIQGLMPIPDLILRFEKSCR+V+ESIR
Sbjct: 125 SLKACKIEDESLTDSGETVFGLFASLLDSAIQGLMPIPDLILRFEKSCRNVAESIR 180