Jatropha Genome Database

JcCB0108421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0108421.10 - phase: 0 /partial
         (425 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002379 conserved hypothetical protein                          329   2e-90
29958.m000940 conserved hypothetical protein                          134   1e-31

>29729.m002379 conserved hypothetical protein
          Length = 394

 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/235 (69%), Positives = 177/235 (75%), Gaps = 28/235 (11%)

Query: 179 MGNGIGKPKNLSSFVGTSGEVIAVKDGGGHIGQTGTNAVTIAEPDGEMYYSQYLQATEGA 238
           +GNG GKPK  SSF                            E DGE+YYSQYLQA EG+
Sbjct: 150 IGNGNGKPKQHSSF----------------------------EADGEIYYSQYLQANEGS 181

Query: 239 GSGGKDVGVENGCXXXXXXXXXXXXXXXXXXLRAILSDAVTGALMDDAMILPCGHSFGAG 298
           G+GGKD+ +ENGC                  LRAILSD VTGALMDDAMILPCGHSFG G
Sbjct: 182 GNGGKDMALENGCGFSGRKEASSFSSDSGDSLRAILSDPVTGALMDDAMILPCGHSFGVG 241

Query: 299 GIQHVIRTKACYTCSQSISEDAIAPNLSLRAAVQAFRREEELQFYRSSKRRRERFDQDKG 358
           GIQH+IRTKACYTCSQS +ED++APNLSLRAAVQAFRREEELQFYRSSKR+RERFDQDKG
Sbjct: 242 GIQHIIRTKACYTCSQSTTEDSVAPNLSLRAAVQAFRREEELQFYRSSKRKRERFDQDKG 301

Query: 359 VYGDSTATDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWFV 413
            +GDSTA D PRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGW+V
Sbjct: 302 GFGDSTAMDAPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYV 356



 Score =  135 bits (340), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 71/89 (79%), Gaps = 11/89 (12%)

Query: 1  MSAEEIALVPSQNGLNSQLVFQDDPLRFNCGPPQRRVGGDPGPKTTTRELSGFIDDKLFS 60
          MSAEEI    SQNGLN+Q VFQDDPLRFNCGP  RRVGGDPGPKTTTREL+GFIDDKLFS
Sbjct: 1  MSAEEI----SQNGLNTQFVFQDDPLRFNCGPTNRRVGGDPGPKTTTRELAGFIDDKLFS 56

Query: 61 SPNSXXXXXNDRYFPSHQGGPEFPRNMYR 89
          S        NDRYFPS   GPEFPRNMYR
Sbjct: 57 S----SAATNDRYFPS---GPEFPRNMYR 78


>29958.m000940 conserved hypothetical protein
          Length = 560

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 101/152 (66%), Gaps = 8/152 (5%)

Query: 270 LRAILSDAVTGALMDDAMILPCGHSFGAGGIQHVIRTKACYTCSQSISEDAIAPNLSLRA 329
           LR++LSD ++GA ++DAM + CGHSFG   ++ V+    C  C+  I   +  PN +LRA
Sbjct: 369 LRSVLSDPLSGAFLEDAMFVSCGHSFGGLMLRRVLEMSRCTLCNAEIEAGSPVPNFALRA 428

Query: 330 AVQAFRREEELQFYRSS---KRRRERFDQDKGVY-----GDSTATDTPRGRGVQFPFAVT 381
           A  A R+E++ + + ++   KRR++  DQ   +        S A D    +GVQ+PF+V 
Sbjct: 429 AAAAVRQEDDRRLFHNAALRKRRKDMGDQTDSIRRPCRENGSIAADDGLHKGVQYPFSVN 488

Query: 382 DRVIIKGNKRTPQRFVGREAVVTTQCLNGWFV 413
           ++V+IKGN+RTP++FVG+EA++T+QCLNGW++
Sbjct: 489 EKVVIKGNRRTPEKFVGKEAIITSQCLNGWYL 520