Jatropha Genome Database

JcCB0108171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0108171.10 - phase: 0 
         (596 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m001994 hypothetical protein                                    664   0.0  
30128.m008803 conserved hypothetical protein                          293   2e-79
29726.m004024 hypothetical protein                                    147   1e-35

>29647.m001994 hypothetical protein
          Length = 599

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/600 (59%), Positives = 419/600 (69%), Gaps = 7/600 (1%)

Query: 1   MKSMLQVSRKFAEGKISFEEYVFTLKSAVGINMFIEAVGIGKGKHDLTGIAMEPTKPGHI 60
           M  +LQVSR FAEG+ISFEEYVFTLK  VGI+  I+ V IGKGK DLTG A+EP KP   
Sbjct: 1   MAVVLQVSRSFAEGRISFEEYVFTLKRIVGISTLIQVVAIGKGKDDLTGTAVEPIKPNQT 60

Query: 61  NSIRPEIPIGKACSSLTSSDIIKFLTGDFRLSKARSNHLFWEAVWPRLLARGWHSEQPKD 120
            S+RPEIP+GKA SSLTSS IIKFLTGDFRLSKARS  LFWEAVWPRLLARGWHSE+PKD
Sbjct: 61  ISVRPEIPVGKAWSSLTSSGIIKFLTGDFRLSKARSGDLFWEAVWPRLLARGWHSEKPKD 120

Query: 121 NGSSGSKHSLVFLIPGVKKFSRRRLVKSKHYFDSVSDVLNKVASDPGLLELEIEEVKGSK 180
           NG  GSK+SLVFLIPG+KKFSRRRLVK  HYFDSV+DVL KVAS+PGLLEL+IE  + S+
Sbjct: 121 NGICGSKNSLVFLIPGIKKFSRRRLVKGNHYFDSVTDVLCKVASEPGLLELDIEATQSSQ 180

Query: 181 HKEECNWDPSLKLDQDGLINKQHQCYLQPHRSNYSQDVPKFTVVDTSLAHGAEQHKVREL 240
           HKEE   DP    DQDGL  KQH CYLQP  S Y+Q+V KFTVVDTSLAHGAE+ KVREL
Sbjct: 181 HKEEGALDPPGNQDQDGLSKKQHYCYLQPRNSQYNQNVTKFTVVDTSLAHGAERTKVREL 240

Query: 241 RSLPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPAEDVT-----VSSSDCANNL 295
           RSLPV                                  P E+V      V S  C N+ 
Sbjct: 241 RSLPVENASLSSFSSLSSETDEDTSEDSQENVVETNTSNPQENVINRRACVDSLACVNSP 300

Query: 296 PNIDRHNYLCQTIAAEENNENKIRSVINAKEEKKTMKYQFGRKVKSSCSKYLVPITNQQS 355
           PNID HN    ++ AEE++EN+  +V   KE +KTMKYQF RK +S CSKYLVPIT QQ 
Sbjct: 301 PNIDIHNTPGPSVLAEESHENQSVTVNIDKEVRKTMKYQFSRKAESGCSKYLVPITKQQG 360

Query: 356 DIACDPKDSSCSNKNMSAERQLNEDESHCTAKSH-DTCEHMVVQESPMQNSSPASSLAKD 414
           ++AC+P  SSC  K+MSA+R+L  DESH    +  D CE M+VQ  P  + S ASSLAKD
Sbjct: 361 NVACNPGGSSCHTKSMSADRKLTRDESHYYMSNLPDVCEEMIVQVDP-HSLSSASSLAKD 419

Query: 415 SPVESNEGIVGENCLGREAYPENTQSPKLIDLNIPHVSPDFPVTEPIMTDREQDDDNSCE 474
           SP ESNEG+V E+ L ++A      SPKLIDLNIP VSPD  V    MT  EQ+++  C 
Sbjct: 420 SPAESNEGLVNEHFLFQDASSGKPLSPKLIDLNIPSVSPDLAVDGHGMTAMEQNNEYVCV 479

Query: 475 NKSVFLSGTGQQPEPFKLPDAGPHLAQQPLANSRRQSTRNRPLTTKALEALELGFFSPKK 534
           N S FLSG GQQPEP+KLPDA  H  QQP+ NSRRQSTR+RPLTTKALEALE+GF +  K
Sbjct: 480 NNSSFLSGLGQQPEPYKLPDAEVHTGQQPIMNSRRQSTRSRPLTTKALEALEMGFLALTK 539

Query: 535 KRKGADISESNSLSGSSRQVRKRIRVKATPKDVAANYIADSRSIEFLDGFHGGSCVMNDS 594
           KRK AD+ E NS+S  S +VR++   KAT K  A +  A S++ E LDGFH  S ++ +S
Sbjct: 540 KRKCADVLEKNSISRPSPRVRRKTSSKATSKAGATDDAAQSKAGESLDGFHDKSDMVGES 599


>30128.m008803 conserved hypothetical protein
          Length = 962

 Score =  293 bits (749), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/242 (59%), Positives = 179/242 (73%), Gaps = 3/242 (1%)

Query: 3   SMLQVSRKFAEGKISFEEYVFTLKSAVGINMFIEAVGIGKGKHDLTGIAMEPTKPGHINS 62
           ++L+VS  F+EGK+S E+YVF LK++VGI   ++A+GIGKG+ DLT +AME    G  N 
Sbjct: 280 TLLEVSTAFSEGKLSLEDYVFNLKASVGIQALVDAIGIGKGREDLTSLAMET---GKNNP 336

Query: 63  IRPEIPIGKACSSLTSSDIIKFLTGDFRLSKARSNHLFWEAVWPRLLARGWHSEQPKDNG 122
           +    PIGKACSSLTSSDIIK LTG FRLSKAR N +FWEAVWPRLLARGWHSEQPK+  
Sbjct: 337 LFAGCPIGKACSSLTSSDIIKLLTGGFRLSKARCNDIFWEAVWPRLLARGWHSEQPKNQI 396

Query: 123 SSGSKHSLVFLIPGVKKFSRRRLVKSKHYFDSVSDVLNKVASDPGLLELEIEEVKGSKHK 182
             GS H LVFLIPGVKKFS+R+LVK  HYFDSVSDVL+KVAS+P L+ELE EEV+GS + 
Sbjct: 397 YMGSSHCLVFLIPGVKKFSKRKLVKGNHYFDSVSDVLSKVASEPKLIELETEEVRGSIYN 456

Query: 183 EECNWDPSLKLDQDGLINKQHQCYLQPHRSNYSQDVPKFTVVDTSLAHGAEQHKVRELRS 242
           EE  W   +  DQD    +Q   YL+P  S+ + ++ +FT+VD+ L  G +  K+RE+R 
Sbjct: 457 EEDRWVAEVSSDQDDPSIRQSHRYLKPRVSSCNLNLVRFTIVDSGLVDGGKLSKMREMRY 516

Query: 243 LP 244
            P
Sbjct: 517 AP 518



 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 154/367 (41%), Gaps = 44/367 (11%)

Query: 220 KFTVVDTSLAHGAEQHKVRELRSLPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXY 279
           KFT+VDTSL    +   VRELR  PV                                  
Sbjct: 580 KFTIVDTSLIDLGKSSMVRELRYAPVGVKVASEMSKSSKKNEGNSSMESLDWNVPVATNK 639

Query: 280 P------------AEDVTVSSSDCANNLPNIDRHNYLCQTIAAEENNENKIRSVINAKEE 327
                        +EDV  SSS     + N D  N L +++  ++NN    ++     + 
Sbjct: 640 LLNGEKDACKSDHSEDVIGSSSSEKKEV-NRDFRNKLVESL--QDNNHESAKN-----QS 691

Query: 328 KKTMKYQFGRKVKSSCSKYLVPITNQQSDIACDPKDSSCSNKNMSAERQLNEDESHCTAK 387
            +++K++F R+ KS  S  LVP+  ++   AC   + S   +N S      ++ES C   
Sbjct: 692 TRSIKHKFSRRPKSGNSNNLVPVVKRRRLTACANTEISHVIENFSVGLGSKQEESCCPLN 751

Query: 388 SHDTCEHMVVQESPMQNSSPASSLAKDSPVESNEGIVGENCLGREAYPENT--QSPKLID 445
           S       +   +P Q  S  +SL +    ES   ++ +   G  ++  N   QSP LID
Sbjct: 752 SIKEGSSRLQGITP-QKLSLTTSLVEGCLEESAGSMLDKTLDGEASHGTNAKHQSPSLID 810

Query: 446 LNIPHVSPDFPVTEPIMTDREQDDDNSCENKSVFLSGTGQQPEPFKLPDA--------GP 497
            N+P V    P     + D E     S +  +V L+     P     PD+          
Sbjct: 811 FNLPEV----PFYSEALMDAE-----SSQGSNVKLTCF---PSNLDKPDSEALSASVDAC 858

Query: 498 HLAQQPLANSRRQSTRNRPLTTKALEALELGFFSPKKKRKGADI-SESNSLSGSSRQVRK 556
             A++P  N RRQSTRNRPLTT+ALEALE GF    K++K   + ++   L  SSR    
Sbjct: 859 TAAEKPGMNPRRQSTRNRPLTTRALEALECGFMGSVKRQKSMQVQTQELPLPSSSRWSHI 918

Query: 557 RIRVKAT 563
           +++  A+
Sbjct: 919 KVKFTAS 925


>29726.m004024 hypothetical protein
          Length = 755

 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 180/566 (31%), Positives = 234/566 (41%), Gaps = 122/566 (21%)

Query: 3   SMLQVSRKFAEGKISFEEYVFTLKSAVGINMFIEAVGIGKGKHDLTGIAMEPTKPGHINS 62
           ++ +V++KF EG +  EEYVFTLKS VG+                             N+
Sbjct: 225 TLTEVAKKFGEGNMLLEEYVFTLKSTVGL-----------------------------NA 255

Query: 63  IRPEIPIGKACSSLTSSDIIKFLTGDFRLSKARSNHLFWEAVWPRL-LARGWHSEQPKDN 121
           +   + IGK    LT             L   RSN +   AV P + + +      P + 
Sbjct: 256 LVEAVGIGKRKQDLTG----------MALEPLRSNQV--AAVRPEIPVGKACSILTPLE- 302

Query: 122 GSSGSKHSLVFLIPGVKKFSRRRLVKSKHYFDSVSDVLNKVASDPGLLELEIEEVKGSKH 181
                   + FL  G +                  DVLNKVASDPGLLEL I E KG   
Sbjct: 303 -------IINFLTGGYR------------------DVLNKVASDPGLLELNIGEDKGCDD 337

Query: 182 KEECNWDPSLKLDQDGLINKQHQCYLQPHRSNYSQDVPKFTVVDTSLAHGAEQHKVRELR 241
           KEE  W     LDQ    ++Q  CYL+P   + S++V KFTVVDTSLA G E ++VRELR
Sbjct: 338 KEENGWANEKILDQGEFSDQQRHCYLKPRTPSRSKEVMKFTVVDTSLATG-ETNRVRELR 396

Query: 242 SLPVXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXYPAEDVTVSS---SDCANNL 295
           SL +                                        D+  SS    D  ++ 
Sbjct: 397 SLAIELMNVSTSRSDSEESDEDPFQDTRNVSDSSANLCSDRNKTDILKSSKINEDKRDSS 456

Query: 296 PNIDRHNYLCQTIAAEENNENKIRSVINAK--EEKKTMKYQFGR-----------KVKSS 342
           P  DR N+    I A E++   I S    K  +E+K  KY   R           K K  
Sbjct: 457 P--DRANF---EINALEHSSPIIGSNFTKKIPKEQKAGKYDDMRPTKSIKGHAIKKTKPG 511

Query: 343 CSKYLVPITNQQSDIACDPKDSSCSNKNMSAERQLNEDESHCTAKSHDTCEHMVVQESPM 402
              +L P+  ++  +A   K +   NK  S  RQ   DE  CT+      E +     P 
Sbjct: 512 DMNFLAPVAKRRRRVAACNKAAKVCNKIDSMLRQ---DEVICTSSYPLMEEKVSSCLDPY 568

Query: 403 Q-NSSPASSLAKDSPVESNEGI--VGENCLGREAYPENTQSPKLIDLNIPHVSPDFPVTE 459
           Q   S ASS ++ SP  ++E    +  N    E   EN QS  LIDLNI    P    TE
Sbjct: 569 QVKISSASSSSRGSPNITDECTLSLSSNSSVAEHTNENYQSRTLIDLNISF--PQDAETE 626

Query: 460 PI---MTDREQDDDNSCENKSVFLSGTGQQPEPFKLPDAGPHLA-----QQPLANSRRQS 511
           P+   MT+R  D                +QPE   +      +      Q P  NSRRQS
Sbjct: 627 PLIMEMTERVHDQ-------------ASEQPEDSGMLKTSTSICNSSYEQAPSMNSRRQS 673

Query: 512 TRNRPLTTKALEALELGFFSPKKKRK 537
           TRNRPLTTKALEAL  GF S K+KR+
Sbjct: 674 TRNRPLTTKALEALAFGFLSIKQKRR 699