Jatropha Genome Database

JcCB0107371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0107371.10 + phase: 0 /partial
         (116 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007071 bifunctional dihydrofolate reductase-thymidylate s...   187   1e-48
30170.m014082 bifunctional dihydrofolate reductase-thymidylate s...   150   9e-38

>30131.m007071 bifunctional dihydrofolate reductase-thymidylate
           synthase, putative
          Length = 528

 Score =  187 bits (474), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 92/109 (84%)

Query: 8   NGELSCQMYQRSADMGLGVPFNIASYALLTCIVSHVCDLVPGDFVHVLGDAHVYRTHVRX 67
           NGELSCQMYQRSADMGLGVPFNIASY LLTCI++HVCDLVPGDFVHV+GD HVYRTHVR 
Sbjct: 420 NGELSCQMYQRSADMGLGVPFNIASYGLLTCIIAHVCDLVPGDFVHVIGDTHVYRTHVRP 479

Query: 68  XXXXXXXXXXXXXILKINPEKKNIDSFVAADFKLIGYDPHQKIEMKMAI 116
                        ILKINPEKKNIDSFVAADFKLIGYDPH KIEMKMA+
Sbjct: 480 LQEQLQKLPKPFPILKINPEKKNIDSFVAADFKLIGYDPHHKIEMKMAV 528


>30170.m014082 bifunctional dihydrofolate reductase-thymidylate
           synthase, putative
          Length = 591

 Score =  150 bits (380), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 70/106 (66%), Positives = 83/106 (78%)

Query: 8   NGELSCQMYQRSADMGLGVPFNIASYALLTCIVSHVCDLVPGDFVHVLGDAHVYRTHVRX 67
           NGELSCQMYQRSAD+GLGVPFNIA YALLTCI++HVC LVPGDF+H++GDA V  TH+  
Sbjct: 480 NGELSCQMYQRSADIGLGVPFNIAFYALLTCIIAHVCALVPGDFIHLIGDARVCTTHIGP 539

Query: 68  XXXXXXXXXXXXXILKINPEKKNIDSFVAADFKLIGYDPHQKIEMK 113
                        IL+INP KK+IDSF A+DF+LIGYDPH+ I+MK
Sbjct: 540 LQKQLQKLPTPFPILRINPAKKDIDSFEASDFQLIGYDPHEYIDMK 585