Jatropha Genome Database

JcCB0106871.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0106871.30 + phase: 0 /partial
         (159 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30213.m000678 conserved hypothetical protein                           72   9e-14

>30213.m000678 conserved hypothetical protein
          Length = 63

 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 41/50 (82%)

Query: 12 ITELIPVMNKITEHKLKGTNYLDWSKTIQIYLRSVEKDDHLIDDPPTGDT 61
          +TE+IP+M+KITE+KL G+NYLDW K +QIYL S+ KD+H I+DPP   T
Sbjct: 10 VTEVIPMMSKITEYKLTGSNYLDWRKIVQIYLHSISKDNHPIEDPPVDKT 59