Jatropha Genome Database

JcCB0106871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0106871.10 + phase: 0 /pseudo/partial
         (219 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29932.m000590 ribose-5-phosphate isomerase, putative                  170   5e-43
30128.m008607 ribose-5-phosphate isomerase, putative                  133   5e-32

>29932.m000590 ribose-5-phosphate isomerase, putative
          Length = 264

 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 116/178 (65%), Gaps = 24/178 (13%)

Query: 1   DELKKIAAYEVVDFVQSGIVLGLSADSTTKYVIDRIANLLEXXXXXXNSIGIPTSKKTHQ 60
           DELKKIAAY+ V+FVQSG+VLGL   ST K+ +DRIA+LL       N +GIPTSKKT +
Sbjct: 30  DELKKIAAYKAVEFVQSGMVLGLGTGSTAKHAVDRIADLLHQGKLT-NIVGIPTSKKTQK 88

Query: 61  HALPLGIPLSDLDSHPNVDLDTENTDKVDSYLNLMKGRGGSLLREKMIEILLTSQNWFLI 120
            AL LGIPLSDLDSHP VDL  +  D+VDS+LNL+KGRGGSLLREKMIE     + + +I
Sbjct: 89  QALSLGIPLSDLDSHPVVDLAIDGADEVDSHLNLVKGRGGSLLREKMIE--SACKKFIVI 146

Query: 121 LELIK------------PAETLPFCWKFTQERC--------LVAKLRRNGDSKNGEPL 158
           ++  K            P E +PFCWKFTQE+          VAKLR +   K  EP 
Sbjct: 147 VDETKLVPHIGANGGAMPVEVVPFCWKFTQEKLQSLFDYAGCVAKLRTDNGGKE-EPF 203


>30128.m008607 ribose-5-phosphate isomerase, putative
          Length = 284

 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/174 (43%), Positives = 106/174 (60%), Gaps = 25/174 (14%)

Query: 1   DELKKIAAYEVVDFVQSGIVLGLSADSTTKYVIDRIANLLEXXXXXXNSIGIPTSKKTHQ 60
           D+LKK+AA + VD+V+SG++LGL   ST  +V+ +I  LL+      + IGIPTSK+T +
Sbjct: 54  DDLKKLAADKAVDYVKSGMILGLGTGSTAAFVVAKIGELLKSGELK-DIIGIPTSKRTEE 112

Query: 61  HALPLGIPLSDLDSHPNVDLDTENTDKVDSYLNLMKGRGGSLLREKMIEILLTSQNWFLI 120
            AL LGIPLS LD HP +DL  +  D+VD  LNL+KGRGG+LLREKM+E    + + F++
Sbjct: 113 QALSLGIPLSVLDEHPKLDLAIDGADEVDPDLNLVKGRGGALLREKMVE---AASDKFVV 169

Query: 121 L-------------ELIKPAETLPFCWKFT--------QERCLVAKLRRNGDSK 153
           +             +L  P E + FCWK+         ++  + AKLR N D K
Sbjct: 170 VADETKLVDGLGGSKLAMPVEVVQFCWKYNLIRLKELFKDEGVDAKLRLNEDGK 223