Jatropha Genome Database

JcCB0105731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0105731.10 + phase: 0 /partial
         (113 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29628.m000763 signal recognition particle 19 kD protein, putative     184   9e-48
29889.m003376 signal recognition particle 19 kD protein, putative     183   1e-47

>29628.m000763 signal recognition particle 19 kD protein, putative
          Length = 136

 Score =  184 bits (466), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 86/97 (88%), Positives = 91/97 (93%)

Query: 1   KTIAEGRRISTAKACENPTCVEIGDCCSHLKVPFANEIDKAYPRDFMQVGRVRVLLKRED 60
           KTIA+GRRI T+KACENPTCVEIGDCCSHLK+PFA EIDKAYPRDFMQ+GRVRVLLKR D
Sbjct: 24  KTIAQGRRICTSKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQIGRVRVLLKRGD 83

Query: 61  GTLYNPAIPTRKQLMLHIAALVPRHPGRTKKQEPVFT 97
           GTLYNPAIPTRKQLMLH+A LVPRHPGRTKKQEP  T
Sbjct: 84  GTLYNPAIPTRKQLMLHVAELVPRHPGRTKKQEPAST 120


>29889.m003376 signal recognition particle 19 kD protein, putative
          Length = 136

 Score =  183 bits (465), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/97 (88%), Positives = 90/97 (92%)

Query: 1   KTIAEGRRISTAKACENPTCVEIGDCCSHLKVPFANEIDKAYPRDFMQVGRVRVLLKRED 60
           KTIA+GRRI T KACENPTCVEIGDCCSHLK+PFA EIDKAYPRDFMQ+GRVRVLLKRED
Sbjct: 24  KTIAQGRRICTTKACENPTCVEIGDCCSHLKLPFAIEIDKAYPRDFMQIGRVRVLLKRED 83

Query: 61  GTLYNPAIPTRKQLMLHIAALVPRHPGRTKKQEPVFT 97
           GTLYNPAIPTRKQLMLH+A LVPRHPGRTKKQE   T
Sbjct: 84  GTLYNPAIPTRKQLMLHVAELVPRHPGRTKKQESAST 120