Jatropha Genome Database

JcCB0104641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0104641.10 - phase: 1 /partial
         (112 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30075.m001171 3-hydroxyisobutyrate dehydrogenase, putative             57   2e-09
30071.m000444 3-hydroxyisobutyrate dehydrogenase, putative             48   1e-06

>30075.m001171 3-hydroxyisobutyrate dehydrogenase, putative
          Length = 388

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 1/100 (1%)

Query: 7   LVDAPVSGGVKRASDGTLTIMASGDDEALIHTGAVLAALSEKLYVIKGGCGAGSGVKMVN 66
           ++DAPVSGGV  A  GTLT M  G  +A +    +  ++  K  +  GG G GS  K+ N
Sbjct: 205 MLDAPVSGGVLAAEAGTLTFMVGGSKDAYLAAKPLFLSMG-KSTIYCGGAGTGSAAKICN 263

Query: 67  QLLAGVHIASAAEAMAFGARLGLNTRILFDFIVNSEGTSW 106
            L   V +   +EA+A G  LG++   L     +S    W
Sbjct: 264 NLAMAVSMLGVSEALALGQSLGIDADTLTKVFNSSSARCW 303


>30071.m000444 3-hydroxyisobutyrate dehydrogenase, putative
          Length = 308

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 8   VDAPVSGGVKRASDGTLTIMASGDDEALIHTGAVLAALSEKLYVIKGGCGAGSGVKMVNQ 67
           VD+PVSGG   A DG L I   GD+  +     +   L +  Y+  G  G G   K+ NQ
Sbjct: 131 VDSPVSGGDIGARDGKLAIFGGGDEIVINWLLPIFEVLGKVTYM--GPPGRGQSCKIANQ 188

Query: 68  LLAGVHIASAAEAMAFGARLGLNTRILFDFI 98
           ++ G ++   +E + F  ++GL+ +   D +
Sbjct: 189 IVVGANLLGLSEGLVFAEKVGLDVKQWMDSV 219