Jatropha Genome Database

JcCB0104191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0104191.10 + phase: 0 /partial
         (176 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003279 Seed maturation protein PM36, putative                  285   1e-77

>29889.m003279 Seed maturation protein PM36, putative
          Length = 230

 Score =  285 bits (728), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 136/176 (77%), Positives = 149/176 (84%)

Query: 1   QDYIFVREFVPFVASVLLKACKNSEDGNDMEVILGGLASLNDEIAWFKSEASKWDVSLSN 60
           QDYIFVR+F PFVASVL+KA K S+D NDMEV+LGGLASL++EI WFKSEASKWDV LSN
Sbjct: 55  QDYIFVRQFTPFVASVLIKASKKSDDENDMEVVLGGLASLDEEIDWFKSEASKWDVPLSN 114

Query: 61  TVVHKANQTYCRFLESLMSREVEYALALTALWAIEATYQESFAHCLEDGSKTPPELQETC 120
             VHK NQ YCRFLESLM  EVEYA+A+TA WAIEA YQ+SFAHCLEDG++T  EL+ TC
Sbjct: 115 IAVHKTNQKYCRFLESLMLPEVEYAVAITAYWAIEAVYQQSFAHCLEDGNRTSLELENTC 174

Query: 121 RRWGNEGFGEYCRSLKKIANRYLEKASADVIAKAEVTLLHVLEHEVEFWNMSHRGT 176
           RRWGNE F EYCRSL+ I NR LEKA  DVIAKAEVT L VLEHEVEFWNMSH GT
Sbjct: 175 RRWGNEAFAEYCRSLQTIVNRCLEKAPEDVIAKAEVTFLSVLEHEVEFWNMSHGGT 230