Jatropha Genome Database

JcCB0103991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103991.20 - phase: 1 /partial
         (96 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001661 hypothetical protein                                    142   3e-35
29883.m002016 hypothetical protein                                     75   5e-15
29692.m000532 hypothetical protein                                     60   2e-10
27451.m000241 conserved hypothetical protein                           59   7e-10

>29680.m001661 hypothetical protein
          Length = 1162

 Score =  142 bits (358), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/96 (75%), Positives = 80/96 (83%)

Query: 1    LSGEVSELTGDENNEIFYSGQSFALPTGEIDLDSLANEVSDLNERLKALEADRIFLEHSM 60
            LS E SEL G+E NE+FYSGQS  LP G I LDSLANEVSDLNERLKALEADR FLEHS+
Sbjct: 1067 LSLEKSELYGNEYNEMFYSGQSSPLPPGGIPLDSLANEVSDLNERLKALEADRNFLEHSI 1126

Query: 61   NSIRGGQEGVQFVQEIAFHLKELRRIGIRKEEQKTS 96
            NSIR G+EG+QF+QEIA HLKELRRIGIR  +Q  +
Sbjct: 1127 NSIRNGEEGLQFIQEIASHLKELRRIGIRGRQQTVA 1162


>29883.m002016 hypothetical protein
          Length = 802

 Score = 75.5 bits (184), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 5/86 (5%)

Query: 13  NNEIFYSGQSFALPTG-----EIDLDSLANEVSDLNERLKALEADRIFLEHSMNSIRGGQ 67
           N  I  +G +   P       E DL +L NE++DLNERL+ALE D   LEH++NS++ G+
Sbjct: 714 NTSILGNGSTSIHPVSGKQNEETDLVNLENEIADLNERLEALENDGNLLEHTVNSLQTGK 773

Query: 68  EGVQFVQEIAFHLKELRRIGIRKEEQ 93
           EG++FVQEIA  L+ELR+I +R   Q
Sbjct: 774 EGLKFVQEIAHQLQELRKIVMRDRSQ 799


>29692.m000532 hypothetical protein
          Length = 1014

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 31   DLDS----LANEVSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQEIAFHLKELRRI 86
            D+DS    +  EV  + ERL+ALEADR FL+H M S+R G +G++ +QEI  HL++LR +
Sbjct: 943  DIDSKKLAIEEEVDHVYERLQALEADREFLKHCMGSLRKGDKGIELLQEILQHLRDLRSV 1002

Query: 87   GIR 89
             +R
Sbjct: 1003 ELR 1005


>27451.m000241 conserved hypothetical protein
          Length = 457

 Score = 58.5 bits (140), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 17  FYSGQSFALPTGEIDLDSLA--NEVSDLNERLKALEADRIFLEHSMNSIRGGQEGVQFVQ 74
           F   ++ ++   E+D   LA   EV  + ERL+ALEADR FL+H M+SI  G +G+  +Q
Sbjct: 373 FVEMENSSVSNFELDSKKLALEEEVDHVYERLQALEADREFLKHCMSSINKGDKGMDLLQ 432

Query: 75  EIAFHLKELRRIGIR 89
           EI  HL++LR + +R
Sbjct: 433 EILQHLRDLRAVELR 447