Jatropha Genome Database

JcCB0103641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103641.10 + phase: 0 
         (165 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m003939 mads box protein, putative                              124   2e-29
30174.m009079 mads box protein, putative                              103   4e-23
29790.m000814 mads box protein, putative                               77   3e-15
30174.m009080 mads box protein, putative                               62   2e-10
30174.m008934 mads box protein, putative                               61   3e-10
30147.m014137 mads box protein, putative                               59   1e-09
29929.m004629 mads box protein, putative                               55   1e-08
30190.m011098 mads box protein, putative                               54   4e-08
30138.m003941 mads box protein, putative                               54   5e-08
29790.m000813 mads box protein, putative                               53   5e-08
30174.m008936 mads box protein, putative                               53   5e-08
29596.m000699 mads box protein, putative                               50   3e-07
28333.m000571 mads box protein, putative                               50   6e-07
29804.m001536 mads box protein, putative                               49   7e-07
30026.m001501 mads box protein, putative                               49   1e-06
30170.m013818 mads box protein, putative                               47   5e-06
29908.m006257 mads box protein, putative                               46   7e-06

>30138.m003939 mads box protein, putative
          Length = 244

 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 77/107 (71%), Gaps = 1/107 (0%)

Query: 23  VLNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQE 82
           VL  ++ HFMGE+LD+L+LK+LQNLEQQIDSALKH+RSRKNQ MYESISELQKKDKALQE
Sbjct: 104 VLQRNQRHFMGEELDTLTLKDLQNLEQQIDSALKHVRSRKNQLMYESISELQKKDKALQE 163

Query: 83  QNNQLXXXXXXXXXXMAXXXXXXXXXXXAVNSSPVLIPQSMQSFNLR 129
           QNNQL                        V+SSPVL+PQ +QS N+R
Sbjct: 164 QNNQL-AKKVKEKEKAKAQQTQWEQQNQGVDSSPVLLPQPIQSMNIR 209


>30174.m009079 mads box protein, putative
          Length = 180

 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 23  VLNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQE 82
           +L  +  H++GEDLDSL+LKELQNLEQQ+D+ALKHIR+RKNQ M+ESISELQKK+KA+QE
Sbjct: 42  LLQRNHRHYLGEDLDSLTLKELQNLEQQLDTALKHIRTRKNQLMFESISELQKKEKAIQE 101

Query: 83  QNNQLXXXXXXXXXXMAXXXXXXXXXXXAVNSSPVLIPQ 121
           QNN L          +A             N SP L+PQ
Sbjct: 102 QNNMLSKQIKEKEKAVA-QQALWEQQNHGNNVSPFLMPQ 139


>29790.m000814 mads box protein, putative
          Length = 188

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 60/104 (57%)

Query: 23  VLNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQE 82
           +L  S  +F G+DL  +SL+ELQ+LEQQID+ALK +RSRKNQ  +ES++ LQK +++L E
Sbjct: 42  ILERSLRNFAGKDLGPMSLRELQHLEQQIDTALKRVRSRKNQLYHESLAALQKNERSLHE 101

Query: 83  QNNQLXXXXXXXXXXMAXXXXXXXXXXXAVNSSPVLIPQSMQSF 126
           QNN L          +            + N++    PQ M S 
Sbjct: 102 QNNMLAKQLKENEKTLTREREQWEQQNLSQNAAAFFPPQPMLSL 145


>30174.m009080 mads box protein, putative
          Length = 198

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query: 23  VLNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQE 82
            L  S+ HF+GEDL +L  K+L+ LE Q+DS+LKH+R  K+  M + +S+LQ+K++ L +
Sbjct: 62  ALQRSQRHFLGEDLGNLGTKDLEQLEHQLDSSLKHVRLTKSNFMLDQLSQLQRKEEMLLQ 121

Query: 83  QNNQL 87
            NN L
Sbjct: 122 TNNAL 126


>30174.m008934 mads box protein, putative
          Length = 244

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 24  LNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQEQ 83
           L  ++ H +GEDL  LS+KELQNLE+Q++ AL   R RK Q M E + +L+KK++ L + 
Sbjct: 102 LQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQMEDLRKKERHLGDL 161

Query: 84  NNQL 87
           N QL
Sbjct: 162 NKQL 165


>30147.m014137 mads box protein, putative
          Length = 154

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query: 24 LNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQEQ 83
          L   ++H +GE+L  LS+KELQ +E+Q+D  L   R RK Q + E + EL+KK+  L E+
Sbjct: 21 LQCCQSHLLGEELGPLSVKELQKIEKQLDRTLSQARQRKTQLLVERMEELRKKEHDLGEE 80

Query: 84 NNQL 87
          N QL
Sbjct: 81 NKQL 84


>29929.m004629 mads box protein, putative
          Length = 182

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 44/65 (67%)

Query: 23  VLNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQE 82
            L  S+ + +GEDL  LS K+L++LE+Q+D +LK IRS + Q M + +++LQ+K+  L E
Sbjct: 46  ALQRSQRNLLGEDLGPLSSKDLESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHMLNE 105

Query: 83  QNNQL 87
            N  L
Sbjct: 106 ANKTL 110


>30190.m011098 mads box protein, putative
          Length = 154

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 43/65 (66%)

Query: 23  VLNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQE 82
           +L  SK   +G+ L+  S+ ELQ LE Q++ +L  IR+RKNQ   E I +L++++K L E
Sbjct: 47  LLEVSKRKLLGDGLEPCSVDELQQLENQLERSLTRIRTRKNQLFGEKIEKLREEEKILME 106

Query: 83  QNNQL 87
           +N +L
Sbjct: 107 ENTKL 111


>30138.m003941 mads box protein, putative
          Length = 166

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%)

Query: 23 VLNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQE 82
          VL  S+ + +GEDL  L  KEL+ LE Q++++LKHIRS K Q + + +++LQ +++ L +
Sbjct: 25 VLQRSQRNLLGEDLAPLDTKELEQLEHQLETSLKHIRSTKTQFILDQLTDLQNREQLLLD 84

Query: 83 QNNQL 87
           N  L
Sbjct: 85 ANKAL 89


>29790.m000813 mads box protein, putative
          Length = 180

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 44/64 (68%)

Query: 24  LNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQEQ 83
           L  ++ + +GEDL  LS KEL+ LE+Q++S+LK +RS + Q M + +S+LQ K++ L E 
Sbjct: 42  LQKTQRNLLGEDLGPLSTKELEQLERQLESSLKLVRSTRTQFMLDQLSDLQNKEQLLLEA 101

Query: 84  NNQL 87
           N  L
Sbjct: 102 NRAL 105


>30174.m008936 mads box protein, putative
          Length = 157

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%)

Query: 23  VLNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQE 82
           +L  SK   +G+ L S +L+ELQ +EQQ++ ++  IR+RKNQ   E I +L++K+K L  
Sbjct: 43  LLEVSKRKLLGQGLGSCNLEELQQIEQQLEKSVSSIRARKNQVFKEQIEQLKEKEKQLAA 102

Query: 83  QNNQL 87
           +N +L
Sbjct: 103 ENARL 107


>29596.m000699 mads box protein, putative
          Length = 262

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 40/57 (70%)

Query: 31  FMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQEQNNQL 87
            MGE+L  LS+KELQNLE +++ +L+ +R +K+Q + + I EL +K   + ++N +L
Sbjct: 110 MMGEELSGLSIKELQNLEGRLEMSLRGVRMKKDQLLMDEIEELNRKGNLIHQENVEL 166


>28333.m000571 mads box protein, putative
          Length = 173

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 42/64 (65%)

Query: 24  LNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQEQ 83
           L  S   FMGE L  LS+K+LQ+LE Q++ +L+ IR++K Q + + I EL +K   + ++
Sbjct: 42  LQESHRQFMGEQLYGLSVKDLQSLENQLEMSLRGIRTKKEQILTDEIQELSRKGNLIHQE 101

Query: 84  NNQL 87
           N +L
Sbjct: 102 NVEL 105


>29804.m001536 mads box protein, putative
          Length = 266

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%)

Query: 24  LNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQEQ 83
           L  S    MGE+L  LS K+LQNLE Q++ +LK +R +K+Q + + I EL +K     E+
Sbjct: 130 LQESHRQLMGEELSGLSAKDLQNLENQLEMSLKGVRMKKDQILTDEIRELNRKGNLTYEE 189

Query: 84  NNQL 87
           N +L
Sbjct: 190 NLKL 193


>30026.m001501 mads box protein, putative
          Length = 177

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 24  LNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQEQ 83
           L  S  H +GE L +L+LK+L+ LE +++  +  IRS+KN+ ++  I  +QK++  L   
Sbjct: 56  LQNSNRHMLGESLGALNLKDLKGLEGRLEKGISRIRSKKNELLFAEIEYMQKREIDLHN- 114

Query: 84  NNQL 87
           NNQL
Sbjct: 115 NNQL 118


>30170.m013818 mads box protein, putative
          Length = 287

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 40/62 (64%)

Query: 23  VLNTSKTHFMGEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQE 82
           +L  S  H MG+ L SL++KEL+ LE +++  +  IRS+K++ +   I  LQK++  L+ 
Sbjct: 148 MLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHELLLAEIEYLQKREIELEN 207

Query: 83  QN 84
           ++
Sbjct: 208 ES 209


>29908.m006257 mads box protein, putative
          Length = 161

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 28  KTHFM----GEDLDSLSLKELQNLEQQIDSALKHIRSRKNQQMYESISELQKKDKALQEQ 83
           KTH +    GEDL  LS++ELQ LE+ ++S L  +   K +++   IS L+KK   L E+
Sbjct: 42  KTHQLRQMRGEDLQGLSIEELQQLEKMLESGLTRVLQTKGERIMNEISTLEKKGAQLLEE 101

Query: 84  NNQL 87
           N QL
Sbjct: 102 NKQL 105