Jatropha Genome Database

JcCB0103441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0103441.10 - phase: 0 
         (274 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28976.m000160 conserved hypothetical protein                          387   e-108
29805.m001502 conserved hypothetical protein                           76   1e-14

>28976.m000160 conserved hypothetical protein
          Length = 255

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/271 (71%), Positives = 219/271 (80%), Gaps = 22/271 (8%)

Query: 4   VAVISTKPLRALSPSSFPFLKTPKFPSQYPSHPTVYSPKSTNASTLTTAFNTTKSRLVLR 63
           +++ STK L+  S   F  L +PK    + SH   +    TN ST TT        L++R
Sbjct: 7   MSITSTKSLQLQSLPPFSNLSSPK-SLNFTSHQFPFPKPITNTSTSTTG-------LIMR 58

Query: 64  ASASDFGSYIGESLGDVTIFTAAGEPVMIKDLWDQNEGIAVVALLRHFGCPCCWELASVL 123
           AS+SD+   IG+ LGDVTIFTAAGEPVM K+LWDQNEGIAVVALLRHFGCPCCWELASVL
Sbjct: 59  ASSSDYAGNIGDVLGDVTIFTAAGEPVMFKNLWDQNEGIAVVALLRHFGCPCCWELASVL 118

Query: 124 KESKSKFESAGVKLIAIGVGAPNKARILADRLPFPMDCLYADPDRKAYDVLGLYYGFGRT 183
           KE+KSKF+SAGVKLIAIGVGAPNKAR+LADRLPFPMDCLYADP+R+AY+VLGLYYGFGRT
Sbjct: 119 KEAKSKFDSAGVKLIAIGVGAPNKARMLADRLPFPMDCLYADPNREAYNVLGLYYGFGRT 178

Query: 184 FFNPASVLICTWHATTCLEQAKVFSRFDALQKAVKNYTIEATPDDRSGVLQQGGMFVFKG 243
           FFNPAS              AKVFSRFD+L++AVKNYTIEATPDDRSGVLQQGGMFVFKG
Sbjct: 179 FFNPAS--------------AKVFSRFDSLRQAVKNYTIEATPDDRSGVLQQGGMFVFKG 224

Query: 244 KQLLYARKDEGTGDHAPLDDVFNICCKVPIA 274
           KQLLYARKDEGTGDHA LDDVF++CCKVP+A
Sbjct: 225 KQLLYARKDEGTGDHASLDDVFDVCCKVPVA 255


>29805.m001502 conserved hypothetical protein
          Length = 249

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 21/200 (10%)

Query: 73  IGESLGD-VTIFTAAGEPVMIKDLWDQNEGIAVVALLRHFGCPCCWELASVLKESKSKFE 131
           + E L D V +    G  + I DLW   +  AVVA  RHFGC  C + A  L   K   +
Sbjct: 67  VNEDLLDTVKVLDLGGNEIPISDLWKDRK--AVVAFARHFGCVLCRKRADYLAAKKDIMD 124

Query: 132 SAGVKLIAIGVGAPNKARILADRLPFPMDCLYADPDRKAYDVLGLYYGFGRTFFNPASVL 191
           ++GV L+ IG G+ ++A+  +++  F  + +YAD    +Y+      G   TF   A + 
Sbjct: 125 ASGVALVLIGPGSVDQAKTFSEQTKFKGE-VYADTSHSSYEAFQFVSGVSTTFTPKAGLK 183

Query: 192 ICTWHATTCLEQAKVFSRFDALQKAVKNYTIEATPDDRSGVLQQGGMFVFK-GK-QLLYA 249
           I   +     +  K+    D + +               G  +QGG+ V   GK  + Y 
Sbjct: 184 IIELYMEGYRQDWKLSFEKDTVAR---------------GGWRQGGIIVAGPGKTNISYI 228

Query: 250 RKDEGTGDHAPLDDVFNICC 269
            KD+  GD   ++D+   CC
Sbjct: 229 HKDKEAGDDPDIEDILKACC 248