Jatropha Genome Database

JcCB0102421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0102421.10 - phase: 0 /partial
         (162 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008986 dtdp-4-dehydrorhamnose dehydrogenase, putative          249   5e-67

>30174.m008986 dtdp-4-dehydrorhamnose dehydrogenase, putative
          Length = 318

 Score =  249 bits (635), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 116/162 (71%), Positives = 133/162 (82%)

Query: 1   MEKKNRVLVIGGTGYLGQHLLQGLSEIKERPFDIAFTYHXXXXXXXXXXXXXXHSRSFRV 60
           ME K +VLV+GGTGYLGQHLLQGLSEI++ P+D+AFT+H              HS SF V
Sbjct: 1   METKKKVLVVGGTGYLGQHLLQGLSEIEDSPYDLAFTHHSNSTPPQPLLDAVRHSPSFHV 60

Query: 61  DIKTGEGFQTISYEFGQPDVVVNCAAISVPRACEMDPTAAMSINVPCSLVNWLSSFELNK 120
           D++TG+GFQ I++EFGQPDVVVNCAAIS+PRACE DP  AMSIN+P SLVNWLS+FE   
Sbjct: 61  DLQTGDGFQAITHEFGQPDVVVNCAAISLPRACEKDPATAMSINIPSSLVNWLSTFEGRD 120

Query: 121 TLLIHLSTDQVYEGMKSFYKEEDENVPVNVYGKSKLAAEQFI 162
           TLLIHLSTDQVYEG+KSFYKEEDE VPVNVYGKSKL AE+FI
Sbjct: 121 TLLIHLSTDQVYEGVKSFYKEEDEAVPVNVYGKSKLEAEKFI 162