Jatropha Genome Database

JcCB0102141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0102141.10 - phase: 0 /partial
         (158 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006480 hypothetical protein                                    122   9e-29

>30169.m006480 hypothetical protein
          Length = 1915

 Score =  122 bits (305), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 77/158 (48%), Positives = 90/158 (56%), Gaps = 16/158 (10%)

Query: 1   MEFIGRIVDKEFKGYGVYSGVVQSYDPSSGFFEIVYEDGDSEELDFSEVVSLLERKEAVP 60
           MEF+G+IV K+F+G+GV+SGVVQSYD SSG FEIVY DGDSEELDFSEV SLLE+ EA P
Sbjct: 1   MEFVGKIVKKDFRGHGVFSGVVQSYDASSGLFEIVYGDGDSEELDFSEVASLLEQTEAEP 60

Query: 61  VDXXXXXXXXXXXXXXXXXXXXXNQGQSGNS--ISRSQPIEETLGRPSVVEANVNFDMNR 118
            +                      +G SGNS   S +Q + ETL              N 
Sbjct: 61  GEHKPRLGRRPKKRRRLDLTRREKRGGSGNSNCNSHTQSVVETL-------------RNG 107

Query: 119 NVDLNDGFTGDLGEGEIANGNLRNMN-VDLNEALEKGG 155
           N DLNDG   DL E E  N NL +M  VDLNE +   G
Sbjct: 108 NFDLNDGLIEDLREAERGNDNLGSMTAVDLNEGVNGCG 145