Jatropha Genome Database

JcCB0101331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0101331.10 + phase: 0 
         (103 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29656.m000472 cell cycle checkpoint protein rad17, putative           126   2e-30

>29656.m000472 cell cycle checkpoint protein rad17, putative
          Length = 163

 Score =  126 bits (316), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 73/93 (78%), Gaps = 3/93 (3%)

Query: 2   QIRFPCEDFDDLFMGPR---ANWKGTHGPGSARSEIKELWIDKYKPRSLEELAVHKKKVE 58
           +I+FP EDFD+ F G     ANWK T G     S +KELW+D YKPRSLEELAVH+KKV+
Sbjct: 62  EIKFPSEDFDEFFYGSEVSAANWKETCGSSHGSSNLKELWVDIYKPRSLEELAVHQKKVK 121

Query: 59  GVKIWFEERLRASKEKIENNVLVITGQAGVGKS 91
            VK+WFEERL+ASK+K+ N VLVITGQAGVGKS
Sbjct: 122 EVKMWFEERLKASKDKLSNYVLVITGQAGVGKS 154