Jatropha Genome Database

JcCB0101051.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0101051.30 - phase: 0 
         (230 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014475 conserved hypothetical protein                          171   2e-43

>30147.m014475 conserved hypothetical protein
          Length = 259

 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/263 (43%), Positives = 152/263 (57%), Gaps = 37/263 (14%)

Query: 1   MERASKE----EQNLKQQYKHLQQEWDSIKNSKPRTLRRSATDSRTILKGLKLFDNSPRK 56
           MER +++    E  L+QQYK LQ++W SIK SK RTLRRS TDSRTI +GL   DNSPRK
Sbjct: 1   MERPTRKGKDTEAKLQQQYKSLQEKWYSIKQSKLRTLRRSLTDSRTIDRGLYFLDNSPRK 60

Query: 57  LMSSLQHTRSSLDNGEWKVRDNDLAVVEILRERRAAIQSGKLKGRRRLFNDAE------- 109
           LMS LQH RS    G WKVR+NDLAVVEILRER+AAI+SGK+KG RRLF+ AE       
Sbjct: 61  LMSLLQHRRSP-SGGAWKVRNNDLAVVEILRERKAAIKSGKIKG-RRLFDAAEGANEVNS 118

Query: 110 ------------EGDFVEETEMRSIFSYDSDNENQSVQNNQ------LCPLXXXXXXXXX 151
                       +G   E +E+RS+ SYDSD+E +++  ++      +            
Sbjct: 119 GGIQEIICSYNWDGLVQEISEVRSVCSYDSDDEKENIVESKEEMSRPVYCSSASSLSSTS 178

Query: 152 XXXXXXVCDDCMEKEMVAHEGENKMEKEPAITKQEEKRSD--VKGITRXXXXXXXXXXXX 209
                 +CD+C+EKE++  EGE  +  E   +++E+KR +  VKG               
Sbjct: 179 SSSSAYICDECIEKEILMIEGEKAVAAEVKGSEEEKKRGENGVKGWLAVGLIVIYTIGII 238

Query: 210 SFAMRSFSGYGYR--NEMVLVPT 230
           S  MRSF+   YR  N ++LVPT
Sbjct: 239 S--MRSFTIDNYRDGNMVILVPT 259