Jatropha Genome Database

JcCB0100521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100521.10 - phase: 0 /partial
         (107 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001073 nucleic acid binding protein, putative                  154   8e-39

>29646.m001073 nucleic acid binding protein, putative
          Length = 520

 Score =  154 bits (389), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/104 (75%), Positives = 85/104 (81%)

Query: 4   QQDNMQWGHRQIEPENTSVTAGLGLGLPCDGGSGLKELMMGTPSVFGPKQTTLDFXXXXX 63
           QQDNMQWGHR++EPEN+SVTAGLGLGLPCDGGSGLKELMM TPSVFGPKQTTLDF     
Sbjct: 417 QQDNMQWGHRRVEPENSSVTAGLGLGLPCDGGSGLKELMMATPSVFGPKQTTLDFLGLGM 476

Query: 64  XXXXXXXXXXXXXITSIGSGMDVAAAAASFGGGEYSGKDLGRSS 107
                        ITSIGSG+DVAAAAASFGGGE+SGKD+GRSS
Sbjct: 477 AAGGGSSGGLSALITSIGSGLDVAAAAASFGGGEFSGKDMGRSS 520