Jatropha Genome Database

JcCB0100231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0100231.10 - phase: 1 /partial
         (489 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30226.m001997 DNA binding protein, putative                           540   e-154
30169.m006375 DNA binding protein, putative                           195   4e-50
29917.m001946 conserved hypothetical protein                           61   1e-09

>30226.m001997 DNA binding protein, putative
          Length = 641

 Score =  540 bits (1392), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 316/471 (67%), Positives = 360/471 (76%), Gaps = 21/471 (4%)

Query: 29  AGDESDRENRSVNEXXXXXXXXXXXXXXXXXLEAEPVRDVPGETAPVLSGSNSKPVRGGE 88
           +GDESDRENRSVNE                 ++ +       E APVLSGS+SK      
Sbjct: 182 SGDESDRENRSVNESNSTGSEGEKKGVAKPSVQED-------EEAPVLSGSSSK----SV 230

Query: 89  ESHELGDSATQLSSEVQSSASLGSXXXXXXXXXXEDV--GGDGIKG-ATVKSEPLVTLME 145
           ESHEL DS TQLSSEVQSSASLG           E++  GGDGIKG   VKSEPL+ L+E
Sbjct: 231 ESHELADSVTQLSSEVQSSASLGGKRKRKGRKRREEIAAGGDGIKGRMMVKSEPLIALLE 290

Query: 146 IIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETIQTRLEQGSYASSNLSFYRDLLLLF 205
            IR++ H S FEG L++QET+VYKN++RQHLDLETIQT+LEQGSY+SSNL  YRDLLLLF
Sbjct: 291 SIRAHNHASLFEGPLKTQETDVYKNMIRQHLDLETIQTKLEQGSYSSSNLLCYRDLLLLF 350

Query: 206 NNAIVFFPKTSNESHAAYELRSLVTNEMKKETQKSDSTVAPLDIPPQPKSEPERSDSLLA 265
           NNAIVFF K+SNES AAYELRS+V+N+MKKE QK + T  P +IPPQPKSE ++SDSLLA
Sbjct: 351 NNAIVFFSKSSNESTAAYELRSVVSNQMKKEIQKPEFTAVPQEIPPQPKSELQKSDSLLA 410

Query: 266 KHKASAPIVVCRKRSSLSAKPSPLSFVQKIEHQQQS------SDNEPVSDLKPLAVEQSS 319
           KHKASAPIVVCRKRSSL+AKPSP SF QK E QQ        +DNEP SD KP  VEQS 
Sbjct: 411 KHKASAPIVVCRKRSSLTAKPSPSSFGQKTEQQQPQQQQQQINDNEPPSDSKPPVVEQSL 470

Query: 320 LKIESKEKPVTGTRSSRRSNKNLVKSTNTPSKKPNVSPVTKVSTADKPETPKIDKKKAEP 379
           LKIE+KEKPVTGTRSSRRSNKNL K T TPSKK N SP TKV T D+PETPK +KKK E 
Sbjct: 471 LKIEAKEKPVTGTRSSRRSNKNLAKGTTTPSKKQNASPTTKVDTVDRPETPKTEKKKTEV 530

Query: 380 SSLDKKRSAVDFLKRIKKNSPVEVSKKNTRGAANGAGERKRD-SPGKGEKGKERVSRRNG 438
            +LDKKRSA DFLKRIKKNSPVE +KKNTRG+ NG  E K+D + GKGEKGKERV R+NG
Sbjct: 531 LALDKKRSAADFLKRIKKNSPVETAKKNTRGSVNGGMEWKKDNNTGKGEKGKERVLRKNG 590

Query: 439 DDKQMEESSPSKKNLGRPTKKGAEASKVSGKHGRDSGGKEVAKRPKKRSRR 489
           D+KQ+EESSPSK+N+GRP+KK  E SKVSGK GR++ GKE AKRPKKRSRR
Sbjct: 591 DEKQVEESSPSKRNVGRPSKKSVEVSKVSGKRGRENVGKEAAKRPKKRSRR 641


>30169.m006375 DNA binding protein, putative
          Length = 674

 Score =  195 bits (496), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 168/451 (37%), Positives = 246/451 (54%), Gaps = 68/451 (15%)

Query: 87  GEESHELGDSA-------------TQLSSEVQSSASL-----------GSXXXXXXXXXX 122
           G ES+E+G+S               Q +S+VQSS SL           G           
Sbjct: 244 GGESNEVGESVGESKREERDKEKEKQNNSDVQSSISLSQNKKKRRGSSGGGDRVGSSSGE 303

Query: 123 EDVGGDGIKGATVKSEPLVTLMEIIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETIQ 182
           E  GGD +  A VKSEPLV L+ IIRS+R GS FE RL SQE+E YKNL+RQH+DL+TIQ
Sbjct: 304 EPEGGDEVSPA-VKSEPLVKLLGIIRSHRLGSTFERRLRSQESERYKNLIRQHIDLQTIQ 362

Query: 183 TRLEQGSYASSNLSFYRDLLLLFNNAIVFFPKTSNESHAAYELRSLVTNEMKKETQKSDS 242
           +RL++G Y+S    F+RDLLLLFNNAI+FF K S E+ AA ELR++V  EM ++ +K  +
Sbjct: 363 SRLDKGVYSSCIQKFFRDLLLLFNNAIIFFRKNSPENLAACELRAVVQKEMTEKLRKLKT 422

Query: 243 TVAPLDIPPQPKSEPERSDSLLAKHKASAPIVVCRKRSSLSAKPSPLSFVQKIEHQQQSS 302
              P+   P+PK   + + S    +K+S+ IVVC K +  S K  P + ++K + +++  
Sbjct: 423 --EPVTAKPEPK---QTAVSFSKPNKSSSTIVVCGKGN--SKKAIPENDIKKGDKKEREV 475

Query: 303 D-----NEPVSDLKPLAVEQSSLKIESKEKPVTGTRSSRRSNKNLVKSTNTPSKKPNVSP 357
           +     NE   D      E+S  K  +K++ ++  RSS  SNKN         +  +   
Sbjct: 476 EEKIKLNERQIDSFVKIEEKSIRKKRTKDRSISNHRSSNTSNKN--------GEVKHQYG 527

Query: 358 VTKVSTADKPETPKIDKKKAEPSSLDKKRSAVDFLKRIKKNSPVEV------SKKNTRGA 411
             ++S+ D  E  K++ +K + S+  KK+ A  FLKR+K+NSP EV         +    
Sbjct: 528 GNELSSHDALEM-KVE-RKGKGSTARKKQGAASFLKRMKQNSPSEVPENDDEDYDDDNDN 585

Query: 412 ANGAGERKRDSPGKGEKGK----------ERVSRRNGDDKQMEESSPSKKNLGRPTKKGA 461
            +   + K+DS GK EKG+          ERV+ R+   +   E+   K+ +GRP +K A
Sbjct: 586 DSSEEDEKKDSKGKEEKGRRRGKIIDGMTERVT-RSSRGRGARENGRGKRGVGRPPRKQA 644

Query: 462 EASKV---SGKHGRDSGGKEVAKRPKKRSRR 489
           E  +    +GK GR++GG EV  R +KRS+R
Sbjct: 645 ERGESGGGTGKRGRENGGSEVG-RTRKRSKR 674


>29917.m001946 conserved hypothetical protein
          Length = 473

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 73/116 (62%), Gaps = 5/116 (4%)

Query: 140 LVTLMEIIRSNRHGSFFEGRLESQETEVYKNLVRQHLDLETIQTRLEQGSYASSNL-SFY 198
           ++ + + I  N+  + F  RL+SQ+   YK ++ QH+D++T+++R+   S++ + L   +
Sbjct: 274 IIGIFDSIAENKCATVFRRRLDSQKRGRYKKMILQHMDIDTLRSRIS--SHSITTLKEVF 331

Query: 199 RDLLLLFNNAIVFFPKTSNESHAAYELRSLVTNEMKKETQK--SDSTVAPLDIPPQ 252
           RDLLLL NNA+VF+ KT+ E  +A +LR +VT  +++  +   S +T+  L   PQ
Sbjct: 332 RDLLLLANNALVFYSKTTREYKSALQLREIVTKSLQQHLKDYISKTTITLLSTTPQ 387