Jatropha Genome Database

JcCB0099081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0099081.10 + phase: 0 /partial
         (158 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m004035 conserved hypothetical protein                          226   4e-60
29848.m004543 DNA binding protein, putative                           183   3e-47
29696.m000106 actin binding protein, putative                         181   1e-46
29827.m002589 conserved hypothetical protein                           86   6e-18

>30138.m004035 conserved hypothetical protein
          Length = 1550

 Score =  226 bits (576), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/123 (91%), Positives = 115/123 (93%)

Query: 2    LAAKSPTLLDFHLDLVSLEPATKIQLKSLAEEMQAIIKGLEKVKQELAASEKDGPVSEVF 61
            LAA SP LL+FHLD VSLE ATKIQLKSLAEEMQAIIKGLEKVKQELAASE DGPVS VF
Sbjct: 1393 LAATSPALLNFHLDFVSLEAATKIQLKSLAEEMQAIIKGLEKVKQELAASENDGPVSGVF 1452

Query: 62   RKTLKEFISVAETEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFVRLFR 121
            RKTLKEF+SVAETEV SVTNLY+VVGRNADALA YFGEDPARCPFEQVTATLLNFVRLFR
Sbjct: 1453 RKTLKEFVSVAETEVKSVTNLYAVVGRNADALAQYFGEDPARCPFEQVTATLLNFVRLFR 1512

Query: 122  KAH 124
            KAH
Sbjct: 1513 KAH 1515


>29848.m004543 DNA binding protein, putative
          Length = 1266

 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 103/124 (83%)

Query: 1    VLAAKSPTLLDFHLDLVSLEPATKIQLKSLAEEMQAIIKGLEKVKQELAASEKDGPVSEV 60
            VLA K P LLDF  DL+SLE ATKIQLK LAEEMQAI KGLEKV QEL ASE DG VSE 
Sbjct: 1097 VLAEKLPELLDFQKDLMSLEAATKIQLKYLAEEMQAISKGLEKVLQELTASENDGHVSEY 1156

Query: 61   FRKTLKEFISVAETEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFVRLF 120
            F K+LK F+S AE+EV S+ +LYS VGRNADALALYFGEDPARCPFEQV +TLLNFV++F
Sbjct: 1157 FCKSLKVFLSSAESEVRSLASLYSTVGRNADALALYFGEDPARCPFEQVVSTLLNFVKMF 1216

Query: 121  RKAH 124
             +AH
Sbjct: 1217 IRAH 1220


>29696.m000106 actin binding protein, putative
          Length = 1191

 Score =  181 bits (459), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 100/124 (80%)

Query: 1    VLAAKSPTLLDFHLDLVSLEPATKIQLKSLAEEMQAIIKGLEKVKQELAASEKDGPVSEV 60
            VLA K P LLDF  DL SLE A+KIQLK LAEEMQAI KGLEK+ QEL+ SE DGP+S+ 
Sbjct: 1026 VLADKLPELLDFSKDLASLESASKIQLKFLAEEMQAISKGLEKIVQELSTSESDGPISDN 1085

Query: 61   FRKTLKEFISVAETEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFVRLF 120
            FRK LKEF+  AE EV S+ +LYS VGRN DAL LYFGEDPARCPFEQV +TLLNFV+LF
Sbjct: 1086 FRKILKEFLRFAEAEVRSLASLYSGVGRNVDALILYFGEDPARCPFEQVVSTLLNFVKLF 1145

Query: 121  RKAH 124
             KAH
Sbjct: 1146 NKAH 1149


>29827.m002589 conserved hypothetical protein
          Length = 124

 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 48/59 (81%)

Query: 65  LKEFISVAETEVASVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFVRLFRKA 123
           LK F+  AE EV S+ +LY+ VGRNAD+L+ YFGEDPARCPFEQVT  L+ FV++F+KA
Sbjct: 15  LKNFLDTAEAEVRSLISLYAEVGRNADSLSQYFGEDPARCPFEQVTQILVLFVKMFKKA 73