Jatropha Genome Database

JcCB0097901.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0097901.20 - phase: 0 /partial
         (120 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30078.m002322 conserved hypothetical protein                           84   1e-17

>30078.m002322 conserved hypothetical protein
          Length = 471

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 69/104 (66%), Gaps = 7/104 (6%)

Query: 1   LLSLSLNNDHAVCRFNASFPFTNLESL-----KLADGFGEWTSSSRSIKKLGLEQIDGIE 55
           L SLSL+  +   +F ++F FTNLE L     K+ DGFGEW S+ R+IKKL LE+  G+E
Sbjct: 144 LRSLSLDLGYGSVKFPSTFTFTNLEHLHLKDMKIHDGFGEWISTCRTIKKLYLEETYGME 203

Query: 56  NIKIESCSLEI--LIDELCFRFFNLSISGKRVKSVRVRLEFEYS 97
           NI IES SLE+  LI++   R  N+S+SG R++S+ V+  F  S
Sbjct: 204 NINIESSSLELFELINDSNSRLVNISVSGDRIESLSVQWNFNSS 247