Jatropha Genome Database

JcCB0097241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0097241.10 + phase: 0 
         (76 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30068.m002600 conserved hypothetical protein                           91   2e-19
29866.m000611 conserved hypothetical protein                           65   7e-12

>30068.m002600 conserved hypothetical protein
          Length = 79

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 3/79 (3%)

Query: 1  MNSIFSSFDALCAELLGQTIKSSFASATS--YRLLRNPEQRTSSP-PQETNQRHQQPLRP 57
          MNS+FSSFD LC E LGQTI+S FASAT+  + L+  P+  + SP P+   ++ Q P + 
Sbjct: 1  MNSMFSSFDVLCGEFLGQTIRSPFASATTPHHNLIGKPKAASPSPSPEGVAKQQQPPKKA 60

Query: 58 PRFAPELDGLNCFETLINY 76
           RFAPELDGLNCFETL+N+
Sbjct: 61 QRFAPELDGLNCFETLVNF 79


>29866.m000611 conserved hypothetical protein
          Length = 92

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 15/91 (16%)

Query: 1  MNSIFSSFDALCAELLGQTIKSSFASA------------TSYRLLRNPEQRTSSPPQE-- 46
          M S+FSSFDALCAE  GQ +K S  SA            +  +      +R+ SPP+   
Sbjct: 2  MMSMFSSFDALCAESSGQKLKFSVGSAIQDGNKATAPANSMKKKSGTDGERSVSPPENVK 61

Query: 47 -TNQRHQQPLRPPRFAPELDGLNCFETLINY 76
           ++Q  QQ  R PRFAPE DG++CFET++ Y
Sbjct: 62 GSSQPPQQERRRPRFAPEFDGVHCFETILPY 92