Jatropha Genome Database

JcCB0096691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0096691.10 - phase: 1 /pseudo/partial
         (114 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013673 conserved hypothetical protein                           48   8e-07

>30170.m013673 conserved hypothetical protein
          Length = 617

 Score = 48.1 bits (113), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 24/31 (77%)

Query: 1   YIGSSSSRDSEPERFRRTDGKKWRCSRDTVC 31
           ++G SS+ D EP R RRTDGKKWRCSRD V 
Sbjct: 215 HLGFSSNNDPEPGRCRRTDGKKWRCSRDAVA 245